Variant report

Variant	rs7753063
Chromosome Location	chr6:72016407-72016408
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:71997051..71998652-chr6:72015357..72017042,2	MCF-7	breast:
2	chr6:72005926..72007914-chr6:72016379..72018207,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-OGFRL1-4	chr6:72016167-72018653	NONHSAT113481

Variant related genes	Relation type
ENSG00000119900	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10945296	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1322760	0.88[CEU][hapmap];0.82[EUR][1000 genomes]
rs1407595	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1885676	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1885677	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4585521	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4706482	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4707905	0.88[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4707906	0.96[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap];0.87[YRI][hapmap];0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4707908	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4707911	0.82[EUR][1000 genomes]
rs6902228	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6902283	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6907281	0.96[CEU][hapmap];0.81[CHB][hapmap];0.95[JPT][hapmap];0.86[YRI][hapmap];0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6914937	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7750270	0.82[ASN][1000 genomes]
rs828633	0.82[EUR][1000 genomes]
rs828648	0.81[EUR][1000 genomes]
rs828649	0.81[EUR][1000 genomes]
rs828652	0.81[EUR][1000 genomes]
rs873864	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9346454	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9346458	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9354987	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9354991	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71999800-72033800	Weak transcription	Right Ventricle	heart
2	chr6:72000800-72017600	Weak transcription	Fetal Heart	heart
3	chr6:72001000-72021600	Weak transcription	Fetal Lung	lung
4	chr6:72001000-72038800	Weak transcription	Aorta	Aorta
5	chr6:72001800-72020000	Weak transcription	Fetal Brain Female	brain
6	chr6:72002000-72017600	Weak transcription	Brain Cingulate Gyrus	brain
7	chr6:72002000-72022000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr6:72004000-72017000	Strong transcription	Primary monocytes fromperipheralblood	blood
9	chr6:72004200-72018800	Weak transcription	Brain Angular Gyrus	brain
10	chr6:72004200-72021800	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr6:72004200-72030600	Weak transcription	Lung	lung
12	chr6:72004200-72041600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr6:72004400-72018000	Strong transcription	Monocytes-CD14+_RO01746	blood
14	chr6:72004400-72019600	Weak transcription	NH-A	brain
15	chr6:72004400-72021600	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr6:72004400-72030800	Weak transcription	Pancreas	Pancrea
17	chr6:72004400-72043000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr6:72004600-72019200	Weak transcription	Osteobl	bone
19	chr6:72007000-72017800	Weak transcription	NHLF	lung
20	chr6:72007000-72023000	Weak transcription	Liver	Liver
21	chr6:72009600-72016800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr6:72009800-72025800	Weak transcription	Hela-S3	cervix
23	chr6:72010000-72019000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr6:72010200-72019600	Weak transcription	A549	lung
25	chr6:72010800-72016600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr6:72010800-72020000	Weak transcription	Brain Hippocampus Middle	brain
27	chr6:72010800-72022400	Weak transcription	NHEK	skin
28	chr6:72010800-72038800	Weak transcription	Fetal Kidney	kidney
29	chr6:72011400-72018800	Weak transcription	Fetal Brain Male	brain
30	chr6:72011600-72020000	Weak transcription	Left Ventricle	heart
31	chr6:72011600-72021600	Weak transcription	Psoas Muscle	Psoas
32	chr6:72011600-72022600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr6:72011600-72033600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr6:72011800-72017400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr6:72011800-72019000	Weak transcription	HSMMtube	muscle
36	chr6:72011800-72022600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
37	chr6:72011800-72022800	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr6:72012000-72017800	Weak transcription	NHDF-Ad	bronchial
39	chr6:72012000-72018000	Weak transcription	Primary hematopoietic stem cells	blood
40	chr6:72012000-72019000	Weak transcription	Brain Anterior Caudate	brain
41	chr6:72012800-72018800	Weak transcription	Gastric	stomach
42	chr6:72012800-72019000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr6:72013000-72017600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr6:72013200-72019400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr6:72013200-72020200	Weak transcription	HMEC	breast
46	chr6:72013200-72022400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr6:72013200-72035800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr6:72013400-72019000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr6:72013400-72019000	Weak transcription	Cortex derived primary cultured neurospheres	brain
50	chr6:72013800-72022600	Weak transcription	Adipose Nuclei	Adipose

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