Variant report

Variant	rs13230414
Chromosome Location	chr7:147641341-147641342
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10500195	0.80[CEU][hapmap]
rs10952718	0.90[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs10952720	0.88[ASN][1000 genomes]
rs10952724	0.80[CEU][hapmap]
rs11766926	0.89[CHB][hapmap];0.89[JPT][hapmap]
rs11773362	0.95[CHB][hapmap];0.95[CHD][hapmap];0.86[JPT][hapmap];0.91[MEX][hapmap]
rs12532921	0.81[CEU][hapmap];0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12534783	0.91[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];0.90[JPT][hapmap];0.91[MEX][hapmap]
rs12537012	0.85[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12665922	0.90[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap]
rs12667799	0.95[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12670399	0.95[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.96[GIH][hapmap];0.90[JPT][hapmap];0.96[MEX][hapmap];0.84[TSI][hapmap]
rs12673711	0.85[CEU][hapmap];0.86[TSI][hapmap]
rs13229141	0.89[CHB][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs13243208	1.00[CEU][hapmap]
rs16882145	0.88[MEX][hapmap]
rs17170749	0.85[CEU][hapmap];0.81[TSI][hapmap]
rs1922879	0.90[CHB][hapmap];0.88[JPT][hapmap]
rs1962426	0.85[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap]
rs2204922	1.00[YRI][hapmap]
rs2373281	0.85[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap]
rs2373283	0.95[CHB][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs2373285	0.85[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2373289	0.84[CEU][hapmap]
rs2710095	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs4725756	0.95[CHB][hapmap];0.95[CHD][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs4725761	0.84[MEX][hapmap]
rs4726896	0.85[CEU][hapmap];0.89[TSI][hapmap]
rs4726900	0.81[CEU][hapmap];0.83[GIH][hapmap]
rs4726915	0.80[CEU][hapmap];0.88[MEX][hapmap]
rs715183	0.82[GIH][hapmap];0.92[MEX][hapmap]
rs7792732	0.85[CEU][hapmap]
rs7795880	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023913	chr7:147521075-147806318	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1026058	chr7:147521109-147783042	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv539179	chr7:147521109-147783042	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv934002	chr7:147521110-147807705	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1017610	chr7:147523752-147806427	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147639400-147641400	Weak transcription	Brain Substantia Nigra	brain
2	chr7:147639400-147641400	Weak transcription	Fetal Brain Female	brain
3	chr7:147641000-147642000	Enhancers	Brain Germinal Matrix	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links