Variant report

Variant	rs12670399
Chromosome Location	chr7:147669194-147669195
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10952718	0.85[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap]
rs10952720	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10952721	1.00[YRI][hapmap]
rs11766926	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs11773362	1.00[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap]
rs12532921	0.88[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12534783	0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];1.00[MKK][hapmap];0.85[TSI][hapmap]
rs12537012	0.90[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12539260	0.81[CEU][hapmap];1.00[YRI][hapmap]
rs12665922	0.85[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap]
rs12667799	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12671605	0.82[GIH][hapmap];1.00[YRI][hapmap]
rs12673711	0.81[CEU][hapmap]
rs12674208	0.81[CEU][hapmap];1.00[YRI][hapmap]
rs13229141	0.95[CHB][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs13230414	0.95[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.96[GIH][hapmap];0.90[JPT][hapmap];0.96[MEX][hapmap];0.84[TSI][hapmap];0.92[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs13243208	0.93[CEU][hapmap]
rs16882145	0.81[CEU][hapmap];0.91[MEX][hapmap];1.00[YRI][hapmap]
rs16883782	0.81[CEU][hapmap]
rs17133865	0.81[CEU][hapmap]
rs17170749	0.81[CEU][hapmap]
rs17170796	0.81[CEU][hapmap];1.00[YRI][hapmap]
rs1922879	0.95[CHB][hapmap];0.88[JPT][hapmap]
rs1962426	0.90[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2373281	0.90[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs2373283	0.90[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs2373285	0.90[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2373289	0.89[CEU][hapmap]
rs2710095	0.87[CHB][hapmap];0.86[JPT][hapmap]
rs35532322	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4725756	0.91[CHB][hapmap];0.91[CHD][hapmap];0.95[JPT][hapmap];0.83[MEX][hapmap];0.90[ASN][1000 genomes]
rs4725761	0.81[CEU][hapmap];0.87[MEX][hapmap];0.81[TSI][hapmap];1.00[YRI][hapmap]
rs4726896	0.81[CEU][hapmap];0.83[TSI][hapmap]
rs4726900	0.86[CEU][hapmap];0.86[GIH][hapmap]
rs4726906	0.84[CEU][hapmap]
rs4726915	0.91[MEX][hapmap]
rs6960266	1.00[YRI][hapmap]
rs715183	0.81[CEU][hapmap];0.86[GIH][hapmap];0.95[MEX][hapmap];0.87[TSI][hapmap]
rs757695	0.81[CEU][hapmap];1.00[YRI][hapmap]
rs7792732	0.81[CEU][hapmap]
rs9640249	0.81[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023913	chr7:147521075-147806318	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1026058	chr7:147521109-147783042	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv539179	chr7:147521109-147783042	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv934002	chr7:147521110-147807705	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1017610	chr7:147523752-147806427	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv889399	chr7:147643923-147712471	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv889400	chr7:147650411-147712471	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12670399	EZH2	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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