Variant report

Variant	rs13261079
Chromosome Location	chr8:85151258-85151259
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10092306	0.89[ASN][1000 genomes]
rs10095090	0.92[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap]
rs10100821	0.92[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap]
rs10105026	0.85[JPT][hapmap]
rs10112333	0.86[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs10112823	0.90[CHB][hapmap];0.86[CHD][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs12675082	0.92[CEU][hapmap];0.85[CHB][hapmap];0.82[CHD][hapmap];0.95[JPT][hapmap];0.85[MEX][hapmap];0.80[EUR][1000 genomes]
rs13253565	0.89[ASN][1000 genomes]
rs13261650	0.95[CHB][hapmap];0.91[CHD][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs13265288	0.89[ASN][1000 genomes]
rs13273191	0.89[ASN][1000 genomes]
rs13281165	0.86[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13281339	0.89[ASN][1000 genomes]
rs1388413	0.96[CEU][hapmap];0.86[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap];0.90[MEX][hapmap]
rs1388420	0.85[JPT][hapmap]
rs1491555	0.86[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs1907548	0.92[ASW][hapmap];0.96[CEU][hapmap];0.86[CHB][hapmap];0.86[CHD][hapmap];0.95[JPT][hapmap];0.90[MEX][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2061866	0.85[JPT][hapmap]
rs317952	0.85[JPT][hapmap]
rs317953	0.85[JPT][hapmap]
rs317954	0.85[JPT][hapmap]
rs4366083	0.92[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap]
rs4392892	0.92[ASW][hapmap];0.96[CEU][hapmap];0.82[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];0.90[MEX][hapmap];0.90[YRI][hapmap];0.97[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4518663	0.96[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4644249	0.86[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs4740003	0.85[TSI][hapmap]
rs4740008	0.92[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap]
rs4740010	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs6473548	0.85[JPT][hapmap]
rs6996404	0.86[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs7002872	0.92[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap]
rs7010781	0.85[JPT][hapmap]
rs729336	0.81[JPT][hapmap]
rs7829111	0.86[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2753846	chr8:84637092-85239703	Active TSS Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv831374	chr8:85103604-85308976	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs13261079	RALYL	cis	cerebellum	SCAN
rs13261079	MMP16	cis	cerebellum	SCAN
rs13261079	PSKH2	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:85150400-85155800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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