Variant report

Variant	rs4644249
Chromosome Location	chr8:85173662-85173663
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10092306	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10095090	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10100821	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs10102752	0.83[EUR][1000 genomes]
rs10102848	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10112333	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10112823	1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[YRI][hapmap];0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12675082	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs12682650	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13253565	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13253923	0.83[EUR][1000 genomes]
rs13261079	0.86[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs13261650	0.90[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13265288	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13266356	0.84[EUR][1000 genomes]
rs13268314	0.82[EUR][1000 genomes]
rs13273191	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13281165	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs13281339	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1352823	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1388412	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1388413	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1388420	0.91[JPT][hapmap]
rs1472101	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1491555	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1491556	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1907548	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2061866	0.90[JPT][hapmap]
rs2130985	0.83[EUR][1000 genomes]
rs28378543	0.82[EUR][1000 genomes]
rs2895920	0.84[EUR][1000 genomes]
rs317952	0.90[JPT][hapmap]
rs317953	0.91[JPT][hapmap]
rs317954	0.90[JPT][hapmap]
rs4366083	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4392892	0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs4509323	0.83[EUR][1000 genomes]
rs4518663	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs4740004	0.84[EUR][1000 genomes]
rs4740008	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4740010	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs6473536	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6473548	0.91[JPT][hapmap]
rs6996404	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7002872	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7010781	0.90[JPT][hapmap]
rs729336	0.86[JPT][hapmap]
rs7825715	0.83[EUR][1000 genomes]
rs7829111	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7829286	0.83[EUR][1000 genomes]
rs7841089	0.82[EUR][1000 genomes]
rs7846520	0.80[EUR][1000 genomes]
rs977857	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs977858	0.88[EUR][1000 genomes]
rs977859	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2753846	chr8:84637092-85239703	Active TSS Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv831374	chr8:85103604-85308976	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:85165400-85178000	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr8:85170000-85178000	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr8:85170000-85178400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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