Variant report
| Variant | rs1388420 |
|---|---|
| Chromosome Location | chr8:85275712-85275713 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:38)
| rs_ID | r2[population] |
|---|---|
| rs10095090 | 0.91[JPT][hapmap] |
| rs10100821 | 0.91[JPT][hapmap] |
| rs10112333 | 0.91[JPT][hapmap] |
| rs10112823 | 0.85[JPT][hapmap] |
| rs12675082 | 0.90[JPT][hapmap];0.81[EUR][1000 genomes] |
| rs13261079 | 0.85[JPT][hapmap] |
| rs13261650 | 0.90[JPT][hapmap] |
| rs13281165 | 0.90[JPT][hapmap] |
| rs1388413 | 0.90[JPT][hapmap] |
| rs1388417 | 0.84[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs1491555 | 0.91[JPT][hapmap] |
| rs1907548 | 0.90[JPT][hapmap] |
| rs2061866 | 1.00[JPT][hapmap] |
| rs317947 | 0.85[JPT][hapmap] |
| rs317952 | 1.00[JPT][hapmap] |
| rs317953 | 0.90[CHB][hapmap];1.00[JPT][hapmap] |
| rs317954 | 1.00[JPT][hapmap] |
| rs4366083 | 0.91[JPT][hapmap] |
| rs4392892 | 0.90[JPT][hapmap] |
| rs4518663 | 0.90[JPT][hapmap] |
| rs4644249 | 0.91[JPT][hapmap] |
| rs4740008 | 0.91[JPT][hapmap] |
| rs4740010 | 0.95[JPT][hapmap];0.87[ASN][1000 genomes] |
| rs6473547 | 0.89[ASN][1000 genomes] |
| rs6473548 | 0.95[CHB][hapmap];1.00[JPT][hapmap] |
| rs6996404 | 0.91[JPT][hapmap] |
| rs7002872 | 0.90[JPT][hapmap];0.82[EUR][1000 genomes] |
| rs7010781 | 0.80[CHB][hapmap];1.00[JPT][hapmap] |
| rs711002 | 0.85[JPT][hapmap] |
| rs711006 | 0.85[JPT][hapmap] |
| rs729336 | 0.95[CHB][hapmap];0.95[JPT][hapmap] |
| rs7829111 | 0.91[JPT][hapmap] |
| rs783507 | 0.85[JPT][hapmap] |
| rs783508 | 0.85[JPT][hapmap] |
| rs783509 | 0.85[JPT][hapmap] |
| rs783788 | 0.85[JPT][hapmap] |
| rs783789 | 0.85[JPT][hapmap] |
| rs783791 | 0.85[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv831374 | chr8:85103604-85308976 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv831375 | chr8:85272352-85463621 | Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
