Variant report

Variant	rs783789
Chromosome Location	chr8:85356525-85356526
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs1021852	0.87[CHB][hapmap];0.86[JPT][hapmap]
rs1021853	0.87[CHB][hapmap];0.86[JPT][hapmap]
rs10504803	0.86[CHB][hapmap];0.85[JPT][hapmap]
rs10504805	0.87[CHB][hapmap];0.86[JPT][hapmap]
rs12114244	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs1319379	0.87[CHB][hapmap];0.86[JPT][hapmap]
rs13248532	0.87[CHB][hapmap];0.86[JPT][hapmap]
rs13252091	0.86[CHB][hapmap];0.85[JPT][hapmap]
rs13253537	0.87[CHB][hapmap];0.86[JPT][hapmap]
rs13255463	0.86[CHB][hapmap];0.84[JPT][hapmap]
rs1351223	0.85[JPT][hapmap]
rs1388420	0.85[JPT][hapmap]
rs1393990	0.85[JPT][hapmap]
rs1479092	0.85[JPT][hapmap]
rs1479093	0.86[JPT][hapmap]
rs1479094	0.81[JPT][hapmap]
rs1479096	0.81[JPT][hapmap]
rs1479098	0.87[CHB][hapmap];0.86[JPT][hapmap]
rs1564314	0.86[CHB][hapmap];0.85[JPT][hapmap]
rs1564315	0.87[CHB][hapmap];0.85[JPT][hapmap]
rs1564316	0.87[CHB][hapmap];0.86[JPT][hapmap]
rs1566791	0.86[CHB][hapmap];0.85[JPT][hapmap]
rs1566792	0.87[CHB][hapmap];0.86[JPT][hapmap]
rs1824887	0.83[JPT][hapmap]
rs1847344	0.85[JPT][hapmap]
rs1947960	0.85[JPT][hapmap]
rs2061866	0.85[JPT][hapmap]
rs2127218	0.87[CHB][hapmap];0.86[JPT][hapmap]
rs2169922	0.87[CHB][hapmap];0.86[JPT][hapmap]
rs2896433	0.97[ASN][1000 genomes]
rs317947	0.89[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap]
rs317952	0.85[JPT][hapmap]
rs317953	0.85[JPT][hapmap]
rs317954	0.85[JPT][hapmap]
rs4739691	0.86[CHB][hapmap];0.85[JPT][hapmap]
rs4740010	0.80[JPT][hapmap]
rs4740015	0.87[CHB][hapmap];0.86[JPT][hapmap]
rs4740016	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs4740018	0.81[JPT][hapmap]
rs4740019	0.87[CHB][hapmap];0.85[JPT][hapmap]
rs4740023	0.86[CHB][hapmap];0.85[JPT][hapmap]
rs6473548	0.85[JPT][hapmap]
rs6473553	0.87[CHB][hapmap];0.85[JPT][hapmap]
rs6473554	0.91[CHB][hapmap];0.86[JPT][hapmap]
rs7010781	0.85[JPT][hapmap]
rs7011638	0.86[CHB][hapmap];0.85[JPT][hapmap]
rs7013087	0.86[CHB][hapmap];0.85[JPT][hapmap]
rs711002	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs711006	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs711007	0.92[CEU][hapmap];0.81[CHB][hapmap];0.85[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs711011	0.83[CHB][hapmap];0.86[JPT][hapmap]
rs711027	0.83[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap]
rs711032	0.87[CHB][hapmap];0.86[JPT][hapmap]
rs711033	0.82[CEU][hapmap];0.86[CHB][hapmap];0.85[JPT][hapmap]
rs711041	0.82[CEU][hapmap];0.86[CHB][hapmap];0.85[JPT][hapmap]
rs711048	0.82[CEU][hapmap];0.86[CHB][hapmap];0.85[JPT][hapmap]
rs711052	0.81[CEU][hapmap];0.86[CHB][hapmap];0.85[JPT][hapmap]
rs711054	0.87[CHB][hapmap];0.86[JPT][hapmap]
rs711059	0.85[JPT][hapmap]
rs711060	0.81[CEU][hapmap];0.85[JPT][hapmap]
rs729336	0.81[JPT][hapmap]
rs7820792	0.86[CHB][hapmap];0.85[JPT][hapmap]
rs7822198	0.87[CHB][hapmap];0.85[JPT][hapmap]
rs7822220	0.87[CHB][hapmap];0.86[JPT][hapmap]
rs783507	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs783508	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs783509	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs783788	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs783791	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap]
rs7845599	0.87[CHB][hapmap];0.86[JPT][hapmap]
rs9298424	0.86[CHB][hapmap];0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831375	chr8:85272352-85463621	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv3481417	chr8:85279453-86145229	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	esv3481418	chr8:85279453-86145229	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links