Variant report

Variant	rs317954
Chromosome Location	chr8:85329895-85329896
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10095090	0.90[JPT][hapmap]
rs10100821	0.90[JPT][hapmap]
rs10112333	0.90[JPT][hapmap]
rs10112823	0.85[JPT][hapmap]
rs11984749	0.82[ASN][1000 genomes]
rs12675082	0.90[JPT][hapmap]
rs13261079	0.85[JPT][hapmap]
rs13261650	0.90[JPT][hapmap]
rs13281165	0.90[JPT][hapmap]
rs1388413	0.90[JPT][hapmap]
rs1388417	0.91[ASN][1000 genomes]
rs1388420	1.00[JPT][hapmap]
rs1491555	0.90[JPT][hapmap]
rs1491565	0.81[CEU][hapmap]
rs1907548	0.90[JPT][hapmap]
rs2061866	1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap]
rs2127220	0.88[CEU][hapmap]
rs317940	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs317942	0.88[CEU][hapmap]
rs317947	0.85[JPT][hapmap]
rs317952	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.95[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs317953	0.82[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs4366083	0.90[JPT][hapmap]
rs4392892	0.90[JPT][hapmap]
rs4518663	0.90[JPT][hapmap]
rs4644249	0.90[JPT][hapmap]
rs4740008	0.90[JPT][hapmap]
rs4740010	0.95[JPT][hapmap]
rs60226	0.88[CEU][hapmap];0.88[GIH][hapmap]
rs6473548	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs6996404	0.90[JPT][hapmap]
rs7002872	0.90[JPT][hapmap]
rs7010781	1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap]
rs711002	0.85[JPT][hapmap]
rs711006	0.85[JPT][hapmap]
rs711033	0.82[MEX][hapmap]
rs711041	0.82[MEX][hapmap]
rs711048	0.82[MEX][hapmap]
rs729336	0.80[CHB][hapmap];0.86[CHD][hapmap];0.95[JPT][hapmap]
rs7829111	0.90[JPT][hapmap]
rs783507	0.85[JPT][hapmap];0.82[MEX][hapmap]
rs783508	0.85[JPT][hapmap]
rs783509	0.85[JPT][hapmap]
rs783788	0.85[JPT][hapmap]
rs783789	0.85[JPT][hapmap]
rs783791	0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831375	chr8:85272352-85463621	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv3481417	chr8:85279453-86145229	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	esv3481418	chr8:85279453-86145229	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv1029152	chr8:85292559-85352660	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
5	esv2761174	chr8:85292571-85342761	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
6	nsv1030263	chr8:85293666-85332024	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
7	nsv1031918	chr8:85293666-85342749	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
8	nsv521782	chr8:85314840-85330924	Enhancers	n/a	n/a	inside rSNPs	n/a
9	nsv523312	chr8:85314840-85330924	Enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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