Variant report

Variant	rs4740010
Chromosome Location	chr8:85271329-85271330
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10095090	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs10100821	1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10112333	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs10112823	1.00[CHB][hapmap];0.89[CHD][hapmap];0.90[JPT][hapmap]
rs12675082	1.00[CHB][hapmap];0.93[CHD][hapmap];0.95[JPT][hapmap];0.89[MEX][hapmap];0.95[TSI][hapmap];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13261079	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs13261650	0.90[CHB][hapmap];0.89[CHD][hapmap];0.95[JPT][hapmap]
rs13281165	1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[EUR][1000 genomes]
rs1388413	1.00[CHB][hapmap];0.91[CHD][hapmap];0.95[JPT][hapmap];0.91[TSI][hapmap]
rs1388420	0.95[JPT][hapmap]
rs1491555	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs1907548	1.00[CHB][hapmap];0.89[CHD][hapmap];0.95[JPT][hapmap];0.88[TSI][hapmap];0.80[EUR][1000 genomes]
rs2061866	0.95[JPT][hapmap];0.84[TSI][hapmap]
rs317947	0.80[JPT][hapmap]
rs317952	0.95[JPT][hapmap]
rs317953	0.95[JPT][hapmap]
rs317954	0.95[JPT][hapmap]
rs4366083	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs4392892	0.95[CHB][hapmap];0.91[CHD][hapmap];0.82[GIH][hapmap];0.95[JPT][hapmap];0.91[TSI][hapmap];0.81[EUR][1000 genomes]
rs4518663	1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[EUR][1000 genomes]
rs4644249	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs4740008	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs6473547	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6473548	0.95[JPT][hapmap]
rs6996404	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs7002872	0.80[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7010781	0.95[JPT][hapmap];0.88[TSI][hapmap]
rs7010963	0.82[CEU][hapmap];0.81[TSI][hapmap]
rs711002	0.80[JPT][hapmap]
rs711006	0.80[JPT][hapmap]
rs729336	0.86[CHD][hapmap];0.90[JPT][hapmap]
rs7829111	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs783507	0.80[JPT][hapmap]
rs783508	0.80[JPT][hapmap]
rs783509	0.80[JPT][hapmap]
rs783788	0.80[JPT][hapmap]
rs783789	0.80[JPT][hapmap]
rs783791	0.80[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831374	chr8:85103604-85308976	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv6281	chr8:85256650-85271875	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
3	nsv437075	chr8:85257540-85271329	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
4	nsv437076	chr8:85257540-85271644	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv1030318	chr8:85257555-85271329	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
6	esv1806721	chr8:85257984-85274061	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
7	nsv611657	chr8:85261157-85271329	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
8	nsv611658	chr8:85261157-85272419	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs4740010	RALYL	cis	cerebellum	SCAN
rs4740010	MMP16	cis	cerebellum	SCAN
rs4740010	ARF1	trans	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:85267200-85272200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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