Variant report
| Variant | rs6473548 |
|---|---|
| Chromosome Location | chr8:85288115-85288116 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:38)
| rs_ID | r2[population] |
|---|---|
| rs10095090 | 0.91[JPT][hapmap] |
| rs10100821 | 0.91[JPT][hapmap] |
| rs10112333 | 0.91[JPT][hapmap] |
| rs10112823 | 0.85[JPT][hapmap] |
| rs12675082 | 0.90[JPT][hapmap];1.00[YRI][hapmap] |
| rs13261079 | 0.85[JPT][hapmap] |
| rs13261650 | 0.90[JPT][hapmap] |
| rs13281165 | 0.90[JPT][hapmap] |
| rs1388413 | 0.90[JPT][hapmap] |
| rs1388417 | 0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs1388420 | 0.95[CHB][hapmap];1.00[JPT][hapmap] |
| rs1491555 | 0.91[JPT][hapmap] |
| rs1907548 | 0.90[JPT][hapmap] |
| rs2061866 | 1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap] |
| rs317947 | 0.85[JPT][hapmap] |
| rs317952 | 0.81[CHB][hapmap];1.00[JPT][hapmap] |
| rs317953 | 0.95[CHB][hapmap];1.00[JPT][hapmap] |
| rs317954 | 0.81[CHB][hapmap];1.00[JPT][hapmap] |
| rs4366083 | 0.91[JPT][hapmap] |
| rs4392892 | 0.90[JPT][hapmap] |
| rs4518663 | 0.90[JPT][hapmap];0.88[YRI][hapmap] |
| rs4644249 | 0.91[JPT][hapmap] |
| rs4740003 | 0.85[YRI][hapmap] |
| rs4740008 | 0.91[JPT][hapmap] |
| rs4740010 | 0.95[JPT][hapmap] |
| rs6996404 | 0.91[JPT][hapmap] |
| rs7002872 | 0.90[JPT][hapmap] |
| rs7010781 | 1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap] |
| rs711002 | 0.85[JPT][hapmap] |
| rs711006 | 0.85[JPT][hapmap] |
| rs729336 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap] |
| rs7829111 | 0.91[JPT][hapmap] |
| rs783507 | 0.85[JPT][hapmap] |
| rs783508 | 0.85[JPT][hapmap] |
| rs783509 | 0.85[JPT][hapmap] |
| rs783788 | 0.85[JPT][hapmap] |
| rs783789 | 0.85[JPT][hapmap] |
| rs783791 | 0.85[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv831374 | chr8:85103604-85308976 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv831375 | chr8:85272352-85463621 | Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | esv3481417 | chr8:85279453-86145229 | Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 29 gene(s) | inside rSNPs | diseases |
| 4 | esv3481418 | chr8:85279453-86145229 | Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 29 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
