Variant report

Variant	rs13286835
Chromosome Location	chr9:103360682-103360683
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:103356597..103359532-chr9:103359671..103361180,2	K562	blood:
2	chr9:103279571..103281078-chr9:103358915..103361806,2	K562	blood:
3	chr9:103350659..103353280-chr9:103360412..103361939,2	K562	blood:
4	chr9:103278757..103281071-chr9:103359482..103361806,2	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11788011	1.00[CEU][hapmap]
rs11788350	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11788918	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs11789665	1.00[CEU][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs11790432	0.86[CEU][hapmap]
rs11791916	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11792747	1.00[CEU][hapmap]
rs11792926	1.00[CEU][hapmap]
rs11793144	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11793359	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs11793457	1.00[CEU][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs11794817	1.00[CEU][hapmap]
rs13283467	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs13284662	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs13289939	0.85[EUR][1000 genomes]
rs13292364	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs13294866	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs13301847	1.00[CEU][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs13302460	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs28759503	0.82[AFR][1000 genomes]
rs34335039	0.82[AFR][1000 genomes]
rs34999135	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs35039632	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs35388593	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs35394420	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs35729051	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7019804	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs7869547	1.00[CEU][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893623	chr9:102648036-103405197	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv893624	chr9:103351931-103416553	Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:103329600-103360800	Weak transcription	Aorta	Aorta
2	chr9:103333600-103360800	Weak transcription	Fetal Brain Male	brain
3	chr9:103348600-103361000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr9:103349600-103360800	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr9:103350600-103360800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr9:103354000-103360800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr9:103354400-103360800	Weak transcription	Brain Substantia Nigra	brain
8	chr9:103354600-103360800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr9:103358000-103360800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr9:103358000-103360800	Weak transcription	Fetal Brain Female	brain
11	chr9:103358000-103360800	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr9:103358000-103360800	Weak transcription	HSMMtube	muscle
13	chr9:103358400-103360800	Weak transcription	Brain Cingulate Gyrus	brain
14	chr9:103359200-103361400	Enhancers	Fetal Heart	heart
15	chr9:103359400-103360800	Enhancers	Brain Germinal Matrix	brain
16	chr9:103359600-103360800	Enhancers	Brain Hippocampus Middle	brain
17	chr9:103359800-103360800	Weak transcription	Left Ventricle	heart
18	chr9:103360000-103360800	Enhancers	H1 Cell Line	embryonic stem cell
19	chr9:103360200-103361800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr9:103360400-103360800	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
21	chr9:103360400-103360800	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
22	chr9:103360400-103360800	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
23	chr9:103360400-103360800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr9:103360400-103360800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
25	chr9:103360400-103360800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr9:103360400-103360800	Enhancers	Duodenum Mucosa	Duodenum
27	chr9:103360400-103360800	Enhancers	Fetal Lung	lung
28	chr9:103360400-103360800	Enhancers	Stomach Smooth Muscle	stomach
29	chr9:103360400-103360800	Enhancers	NHDF-Ad	bronchial
30	chr9:103360400-103361000	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
31	chr9:103360400-103361000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr9:103360400-103361000	Flanking Active TSS	HepG2	liver
33	chr9:103360400-103361000	Flanking Active TSS	HMEC	breast
34	chr9:103360400-103361400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr9:103360600-103360800	Flanking Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr9:103360600-103360800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr9:103360600-103360800	Bivalent/Poised TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr9:103360600-103360800	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr9:103360600-103360800	Enhancers	Primary B cells from peripheral blood	blood
40	chr9:103360600-103360800	Enhancers	Primary T helper naive cells from peripheral blood	blood
41	chr9:103360600-103360800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
42	chr9:103360600-103360800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
43	chr9:103360600-103360800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr9:103360600-103360800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr9:103360600-103360800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr9:103360600-103360800	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr9:103360600-103360800	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr9:103360600-103360800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr9:103360600-103360800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
50	chr9:103360600-103360800	Enhancers	Adipose Nuclei	Adipose

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