Variant report

Variant	rs35394420
Chromosome Location	chr9:103321812-103321813
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs11788011	0.80[EUR][1000 genomes]
rs11788350	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11788918	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11789665	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11790432	0.80[AMR][1000 genomes]
rs11791916	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11792489	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11792747	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11792926	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11793144	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11793359	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11793457	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11794817	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13283467	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13284662	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13286180	0.80[AMR][1000 genomes]
rs13286835	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs13289939	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13292364	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13294866	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13301847	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13302460	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28759503	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs34138998	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34169031	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34234519	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34335039	1.00[AFR][1000 genomes]
rs34390257	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34555593	0.80[AMR][1000 genomes]
rs34759817	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34779059	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34798346	0.80[AMR][1000 genomes]
rs34999135	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35039632	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35255178	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35315430	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35388593	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35495064	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35656901	0.80[AMR][1000 genomes]
rs35729051	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs36011161	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs36055955	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs36105493	0.80[AMR][1000 genomes]
rs55693063	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7019804	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs71507684	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs71507685	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs71507686	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs71507687	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7869547	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9696536	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893623	chr9:102648036-103405197	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:103261600-103340200	Weak transcription	Left Ventricle	heart
2	chr9:103263400-103327600	Weak transcription	Aorta	Aorta
3	chr9:103273600-103337600	Weak transcription	NHDF-Ad	bronchial
4	chr9:103278400-103333000	Weak transcription	Fetal Brain Male	brain
5	chr9:103300200-103327400	Weak transcription	Ovary	ovary
6	chr9:103307400-103323600	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr9:103307400-103331800	Weak transcription	Gastric	stomach
8	chr9:103307400-103332200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
9	chr9:103307400-103341800	Strong transcription	HUES48 Cell Line	embryonic stem cell
10	chr9:103307400-103347800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr9:103308000-103327200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr9:103308000-103340200	Weak transcription	Fetal Muscle Trunk	muscle
13	chr9:103308600-103345400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr9:103311000-103328400	Weak transcription	Fetal Heart	heart
15	chr9:103311600-103330400	Weak transcription	Stomach Smooth Muscle	stomach
16	chr9:103311800-103342400	Weak transcription	Primary hematopoietic stem cells	blood
17	chr9:103312000-103327200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr9:103312200-103328200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr9:103313200-103340800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr9:103313400-103329400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr9:103313400-103331200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr9:103313400-103332000	Weak transcription	Fetal Lung	lung
23	chr9:103314000-103323600	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr9:103316400-103323200	Weak transcription	Brain Germinal Matrix	brain
25	chr9:103317200-103337400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr9:103318400-103322800	Weak transcription	Brain Angular Gyrus	brain
27	chr9:103318400-103323400	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr9:103318400-103326000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr9:103318400-103342400	Weak transcription	Brain Anterior Caudate	brain
30	chr9:103318600-103344000	Weak transcription	Brain Cingulate Gyrus	brain
31	chr9:103318800-103322600	Weak transcription	Brain Hippocampus Middle	brain
32	chr9:103319000-103323600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr9:103319400-103323200	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr9:103319800-103326200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr9:103319800-103336000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr9:103320000-103322400	Weak transcription	H1 Cell Line	embryonic stem cell
37	chr9:103320000-103327600	Weak transcription	HSMMtube	muscle
38	chr9:103320000-103336400	Weak transcription	HSMM	muscle
39	chr9:103320200-103331200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr9:103320600-103323400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr9:103320600-103324200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr9:103320600-103325600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr9:103320600-103327600	Weak transcription	Fetal Brain Female	brain
44	chr9:103321400-103322400	Enhancers	Brain Substantia Nigra	brain
45	chr9:103321400-103323400	Weak transcription	HUES64 Cell Line	embryonic stem cell
46	chr9:103321600-103322600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
47	chr9:103321800-103322600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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