Variant report

Variant	rs35495064
Chromosome Location	chr9:103236830-103236831
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:103187999..103190908-chr9:103233595..103236918,6	MCF-7	breast:
2	chr9:103236639..103238716-chr9:103241240..103244059,2	K562	blood:
3	chr9:103235574..103237865-chr9:103240379..103242748,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000066697	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11788011	0.90[EUR][1000 genomes]
rs11788918	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11789665	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11790432	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11792489	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11792747	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11792926	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11793359	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11793457	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11794817	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13283467	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13284662	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13286180	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13289939	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13292364	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13302460	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28759503	0.80[AMR][1000 genomes]
rs34138998	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34169031	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34234519	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34390257	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34555593	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34759817	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34779059	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34798346	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34999135	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35039632	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35255178	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35315430	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35388593	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35394420	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35656901	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs36011161	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs36055955	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36105493	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs55693063	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7019804	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs71507684	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71507685	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71507686	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71507687	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7869547	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9696536	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893623	chr9:102648036-103405197	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv825012	chr9:103152205-103256281	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv614955	chr9:103181596-103261227	ZNF genes & repeats Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	esv3348068	chr9:103234431-103236904	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	esv3376333	chr9:103234756-103237304	Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:103234600-103237400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
2	chr9:103234600-103237400	Active TSS	Fetal Kidney	kidney
3	chr9:103234800-103237000	Active TSS	Brain Cingulate Gyrus	brain
4	chr9:103234800-103237400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr9:103234800-103237400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr9:103234800-103237400	Active TSS	Brain Germinal Matrix	brain
7	chr9:103235000-103237000	Active TSS	HSMMtube	muscle
8	chr9:103235000-103237000	Active TSS	Osteobl	bone
9	chr9:103235000-103237200	Active TSS	iPS-15b Cell Line	embryonic stem cell
10	chr9:103235000-103237200	Active TSS	HSMM	muscle
11	chr9:103235000-103237200	Active TSS	NHDF-Ad	bronchial
12	chr9:103235000-103237400	Active TSS	ES-I3 Cell Line	embryonic stem cell
13	chr9:103235000-103237600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr9:103235000-103237600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
15	chr9:103235000-103237600	Active TSS	Brain Angular Gyrus	brain
16	chr9:103235000-103237600	Active TSS	Brain Inferior Temporal Lobe	brain
17	chr9:103235000-103238200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr9:103235200-103237000	Active TSS	iPS-18 Cell Line	embryonic stem cell
19	chr9:103235200-103237000	Active TSS	HUVEC	blood vessel
20	chr9:103235200-103237200	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr9:103235200-103237200	Active TSS	HUES48 Cell Line	embryonic stem cell
22	chr9:103235200-103237200	Active TSS	Brain Hippocampus Middle	brain
23	chr9:103235200-103237200	Active TSS	Brain Substantia Nigra	brain
24	chr9:103235200-103237400	Active TSS	HUES64 Cell Line	embryonic stem cell
25	chr9:103235200-103237800	Active TSS	H1 Cell Line	embryonic stem cell
26	chr9:103235200-103237800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr9:103235200-103237800	Active TSS	HUES6 Cell Line	embryonic stem cell
28	chr9:103235200-103237800	Active TSS	iPS-20b Cell Line	embryonic stem cell
29	chr9:103235200-103238000	Active TSS	H9 Cell Line	embryonic stem cell
30	chr9:103235200-103238000	Active TSS	Brain Anterior Caudate	brain
31	chr9:103235200-103238200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr9:103235400-103237400	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr9:103235400-103237600	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr9:103235800-103237000	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr9:103236000-103237000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr9:103236200-103237000	Bivalent Enhancer	Primary neutrophils fromperipheralblood	blood
37	chr9:103236200-103237000	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
38	chr9:103236400-103237000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr9:103236400-103237000	Flanking Active TSS	Fetal Stomach	stomach
40	chr9:103236400-103237400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr9:103236400-103237600	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr9:103236600-103237000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr9:103236600-103237000	Flanking Active TSS	Primary hematopoietic stem cells	blood
44	chr9:103236600-103237000	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 2	blood
45	chr9:103236600-103237000	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
46	chr9:103236600-103237000	Flanking Active TSS	Fetal Brain Male	brain
47	chr9:103236600-103237000	Flanking Active TSS	Fetal Lung	lung
48	chr9:103236600-103237200	Flanking Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr9:103236600-103237600	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
50	chr9:103236600-103241800	Weak transcription	Psoas Muscle	Psoas

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