Variant report

Variant	rs11792926
Chromosome Location	chr9:103230202-103230203
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:103225675..103229353-chr9:103229898..103233058,3	K562	blood:
2	chr9:103228201..103230350-chr9:103235227..103236872,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000241697	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs11788011	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs11788350	1.00[CEU][hapmap]
rs11788918	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11789665	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11790432	0.85[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11791916	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap]
rs11792489	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11792747	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11793144	1.00[CEU][hapmap]
rs11793359	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11793457	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11794817	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13283467	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13284662	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13286180	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13289939	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13292364	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13294866	1.00[CEU][hapmap]
rs13301847	1.00[CEU][hapmap]
rs13302460	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28759503	0.80[AMR][1000 genomes]
rs34138998	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34169031	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34234519	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34390257	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34555593	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34759817	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34779059	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34798346	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34999135	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35039632	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35255178	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35315430	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35388593	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35394420	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35495064	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35656901	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs36011161	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs36055955	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36105493	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs55693063	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7019804	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs71507684	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71507685	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71507686	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71507687	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7869547	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9696536	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893623	chr9:102648036-103405197	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv825012	chr9:103152205-103256281	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv614955	chr9:103181596-103261227	ZNF genes & repeats Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:103215600-103231200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr9:103216600-103235000	Weak transcription	Aorta	Aorta
3	chr9:103216800-103235000	Weak transcription	Fetal Muscle Leg	muscle
4	chr9:103217000-103234800	Weak transcription	Fetal Brain Female	brain
5	chr9:103217200-103234800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr9:103218200-103235000	Weak transcription	NHLF	lung
7	chr9:103218400-103235000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr9:103220200-103234800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr9:103225400-103231400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr9:103225600-103231200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr9:103227400-103230600	Enhancers	HepG2	liver
12	chr9:103228000-103230400	Enhancers	Brain Hippocampus Middle	brain
13	chr9:103228000-103232800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr9:103228600-103233000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr9:103228800-103234600	Weak transcription	Colon Smooth Muscle	Colon
16	chr9:103228800-103235000	Weak transcription	Adipose Nuclei	Adipose
17	chr9:103229000-103235000	Weak transcription	Pancreas	Pancrea
18	chr9:103229200-103231400	Weak transcription	Psoas Muscle	Psoas
19	chr9:103229400-103235000	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr9:103229600-103234600	Weak transcription	Brain Substantia Nigra	brain
21	chr9:103229800-103230400	Enhancers	Brain Angular Gyrus	brain
22	chr9:103230000-103234800	Weak transcription	Brain Cingulate Gyrus	brain
23	chr9:103230200-103231200	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr9:103230200-103234800	Weak transcription	Brain Anterior Caudate	brain
25	chr9:103230200-103235000	Weak transcription	Brain Inferior Temporal Lobe	brain

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