Variant report

Variant	rs11788350
Chromosome Location	chr9:103333680-103333681
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11788011	1.00[CEU][hapmap]
rs11788918	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs11789665	1.00[CEU][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11790432	0.87[CEU][hapmap]
rs11791916	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11792747	1.00[CEU][hapmap]
rs11792926	1.00[CEU][hapmap]
rs11793144	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11793359	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs11793457	1.00[CEU][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11794817	1.00[CEU][hapmap]
rs13283467	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13284662	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13286835	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs13289939	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13292364	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13294866	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13301847	1.00[CEU][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13302460	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs28759503	0.82[AFR][1000 genomes]
rs34138998	0.80[AMR][1000 genomes]
rs34335039	0.82[AFR][1000 genomes]
rs34999135	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35039632	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35388593	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35394420	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35729051	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7019804	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs7869547	1.00[CEU][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893623	chr9:102648036-103405197	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:103261600-103340200	Weak transcription	Left Ventricle	heart
2	chr9:103273600-103337600	Weak transcription	NHDF-Ad	bronchial
3	chr9:103307400-103341800	Strong transcription	HUES48 Cell Line	embryonic stem cell
4	chr9:103307400-103347800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr9:103308000-103340200	Weak transcription	Fetal Muscle Trunk	muscle
6	chr9:103308600-103345400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr9:103311800-103342400	Weak transcription	Primary hematopoietic stem cells	blood
8	chr9:103313200-103340800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr9:103317200-103337400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr9:103318400-103342400	Weak transcription	Brain Anterior Caudate	brain
11	chr9:103318600-103344000	Weak transcription	Brain Cingulate Gyrus	brain
12	chr9:103319800-103336000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr9:103320000-103336400	Weak transcription	HSMM	muscle
14	chr9:103322400-103340400	Weak transcription	Brain Substantia Nigra	brain
15	chr9:103322600-103341800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
16	chr9:103323000-103340200	Weak transcription	Brain Hippocampus Middle	brain
17	chr9:103323400-103342000	Weak transcription	Brain Angular Gyrus	brain
18	chr9:103323800-103340600	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr9:103324000-103340200	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr9:103324800-103345400	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr9:103325600-103337600	Weak transcription	NHLF	lung
22	chr9:103326400-103337800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr9:103327800-103349400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr9:103329600-103360800	Weak transcription	Aorta	Aorta
25	chr9:103329800-103351800	Weak transcription	Ovary	ovary
26	chr9:103330000-103357800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr9:103330400-103345400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr9:103330400-103351600	Weak transcription	Fetal Stomach	stomach
29	chr9:103330800-103349400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
30	chr9:103331200-103335800	Weak transcription	Brain Germinal Matrix	brain
31	chr9:103331200-103335800	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr9:103331600-103335400	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr9:103331600-103336600	Weak transcription	Fetal Brain Female	brain
34	chr9:103331600-103360200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr9:103331800-103335000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr9:103332200-103334200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr9:103332200-103335000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
38	chr9:103332400-103334200	Weak transcription	HUES6 Cell Line	embryonic stem cell
39	chr9:103332400-103334600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr9:103332400-103335600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr9:103332400-103351600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr9:103332400-103357600	Weak transcription	Fetal Lung	lung
43	chr9:103333000-103334800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr9:103333400-103334200	Weak transcription	HUES64 Cell Line	embryonic stem cell
45	chr9:103333600-103360800	Weak transcription	Fetal Brain Male	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links