Variant report

Variant	rs13294866
Chromosome Location	chr9:103341444-103341445
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11788011	1.00[CEU][hapmap]
rs11788350	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11788918	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs11789665	1.00[CEU][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11790432	0.87[CEU][hapmap]
rs11791916	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11792747	1.00[CEU][hapmap]
rs11792926	1.00[CEU][hapmap]
rs11793144	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11793359	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs11793457	1.00[CEU][hapmap];0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11794817	1.00[CEU][hapmap]
rs13283467	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13284662	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13286835	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs13289939	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13292364	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13301847	1.00[CEU][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13302460	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs28759503	0.82[AFR][1000 genomes]
rs34138998	0.80[AMR][1000 genomes]
rs34335039	0.82[AFR][1000 genomes]
rs34999135	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35039632	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35388593	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35394420	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35729051	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7019804	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs7869547	1.00[CEU][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893623	chr9:102648036-103405197	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:103307400-103341800	Strong transcription	HUES48 Cell Line	embryonic stem cell
2	chr9:103307400-103347800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr9:103308600-103345400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr9:103311800-103342400	Weak transcription	Primary hematopoietic stem cells	blood
5	chr9:103318400-103342400	Weak transcription	Brain Anterior Caudate	brain
6	chr9:103318600-103344000	Weak transcription	Brain Cingulate Gyrus	brain
7	chr9:103322600-103341800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
8	chr9:103323400-103342000	Weak transcription	Brain Angular Gyrus	brain
9	chr9:103324800-103345400	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr9:103327800-103349400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr9:103329600-103360800	Weak transcription	Aorta	Aorta
12	chr9:103329800-103351800	Weak transcription	Ovary	ovary
13	chr9:103330000-103357800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr9:103330400-103345400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr9:103330400-103351600	Weak transcription	Fetal Stomach	stomach
16	chr9:103330800-103349400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr9:103331600-103360200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr9:103332400-103351600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr9:103332400-103357600	Weak transcription	Fetal Lung	lung
20	chr9:103333600-103360800	Weak transcription	Fetal Brain Male	brain
21	chr9:103334200-103351000	Strong transcription	HUES64 Cell Line	embryonic stem cell
22	chr9:103334600-103350600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr9:103334800-103350200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr9:103335000-103351000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
25	chr9:103336800-103347800	Weak transcription	Brain Germinal Matrix	brain
26	chr9:103337400-103342800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr9:103337600-103352200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr9:103338600-103348000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr9:103338800-103352200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr9:103339600-103344600	Active TSS	Skeletal Muscle Female	skeletal muscle
31	chr9:103340000-103342600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
32	chr9:103340000-103344400	Active TSS	HSMMtube	muscle
33	chr9:103340000-103344600	Active TSS	Fetal Muscle Leg	muscle
34	chr9:103340000-103344600	Active TSS	Skeletal Muscle Male	skeletal muscle
35	chr9:103340200-103342200	Weak transcription	NH-A	brain
36	chr9:103340200-103344200	Active TSS	Right Atrium	heart
37	chr9:103340200-103344400	Active TSS	Right Ventricle	heart
38	chr9:103340200-103344800	Active TSS	Fetal Muscle Trunk	muscle
39	chr9:103340400-103342200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr9:103340400-103344000	Active TSS	Fetal Heart	heart
41	chr9:103340600-103342000	Weak transcription	NHLF	lung
42	chr9:103340600-103342400	Active TSS	HSMM	muscle
43	chr9:103340600-103342400	Enhancers	Osteobl	bone
44	chr9:103340600-103345200	Weak transcription	Fetal Brain Female	brain
45	chr9:103340600-103351800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr9:103340800-103341600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr9:103340800-103342400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr9:103340800-103351400	Weak transcription	NHDF-Ad	bronchial
49	chr9:103341000-103341600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr9:103341000-103341800	Enhancers	HUVEC	blood vessel

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