Variant report

Variant	rs11790432
Chromosome Location	chr9:103191461-103191462
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:103108916..103110922-chr9:103189088..103192439,3	MCF-7	breast:
2	chr9:103108891..103111879-chr9:103188016..103191736,3	K562	blood:
3	chr9:103187873..103189614-chr9:103191281..103192946,2	K562	blood:
4	chr9:103105076..103107773-chr9:103190189..103193187,3	MCF-7	breast:
5	chr9:103112743..103119519-chr9:103186928..103191502,9	MCF-7	breast:
6	chr9:101982434..101984283-chr9:103190237..103193103,2	MCF-7	breast:
7	chr9:103112020..103116853-chr9:103187928..103193300,12	MCF-7	breast:

Variant related genes	Relation type
ENSG00000119523	Chromatin interaction
ENSG00000066697	Chromatin interaction
ENSG00000136891	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs11788011	0.87[CEU][hapmap];0.80[EUR][1000 genomes]
rs11788350	0.87[CEU][hapmap]
rs11788918	0.87[CEU][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11789665	0.85[CEU][hapmap];0.80[AMR][1000 genomes]
rs11791916	0.87[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap]
rs11792489	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11792747	0.87[CEU][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11792926	0.85[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11793359	0.87[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11793457	0.80[AMR][1000 genomes]
rs11794817	1.00[ASW][hapmap];0.86[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13283467	0.80[AMR][1000 genomes]
rs13284662	0.80[AMR][1000 genomes]
rs13286180	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13289939	0.80[AMR][1000 genomes]
rs13292364	0.80[AMR][1000 genomes]
rs13294866	0.87[CEU][hapmap]
rs13301847	0.87[CEU][hapmap]
rs13302460	0.80[AMR][1000 genomes]
rs28759503	0.80[AMR][1000 genomes]
rs34138998	0.80[AMR][1000 genomes]
rs34169031	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34234519	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34390257	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34555593	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34759817	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34779059	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34798346	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34999135	0.80[AMR][1000 genomes]
rs35039632	0.80[AMR][1000 genomes]
rs35255178	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35315430	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35388593	0.80[AMR][1000 genomes]
rs35394420	0.80[AMR][1000 genomes]
rs35495064	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35656901	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36011161	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs36055955	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs36105493	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55693063	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7019804	0.87[CEU][hapmap];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs71507684	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs71507685	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs71507686	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs71507687	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7869547	0.82[CEU][hapmap];0.80[AMR][1000 genomes]
rs9696536	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893623	chr9:102648036-103405197	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv825012	chr9:103152205-103256281	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv614955	chr9:103181596-103261227	ZNF genes & repeats Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:103188800-103192800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr9:103190000-103191800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr9:103190200-103191600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr9:103190200-103191600	Flanking Active TSS	Colon Smooth Muscle	Colon
5	chr9:103190200-103191600	Enhancers	Small Intestine	intestine
6	chr9:103190200-103191800	Flanking Active TSS	Brain Anterior Caudate	brain
7	chr9:103190400-103191600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
8	chr9:103190400-103191600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
9	chr9:103190400-103191600	Flanking Active TSS	Brain Cingulate Gyrus	brain
10	chr9:103190400-103191600	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
11	chr9:103190400-103191600	Enhancers	Placenta	Placenta
12	chr9:103190400-103191600	Enhancers	Rectal Mucosa Donor 31	rectum
13	chr9:103190400-103191600	Flanking Active TSS	A549	lung
14	chr9:103190400-103191800	Enhancers	Primary T helper cells PMA-I stimulated	--
15	chr9:103190400-103191800	Flanking Active TSS	Fetal Brain Female	brain
16	chr9:103190400-103191800	Enhancers	Placenta Amnion	Placenta Amnion
17	chr9:103190400-103191800	Flanking Active TSS	HUVEC	blood vessel
18	chr9:103190400-103191800	Flanking Active TSS	Osteobl	bone
19	chr9:103190400-103192200	Enhancers	Left Ventricle	heart
20	chr9:103190400-103192200	Flanking Active TSS	Hela-S3	cervix
21	chr9:103190400-103192600	Weak transcription	Pancreas	Pancrea
22	chr9:103190400-103193000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr9:103190400-103206000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr9:103190400-103214200	Weak transcription	Thymus	Thymus
25	chr9:103190600-103191600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr9:103190600-103191600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr9:103190600-103191600	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
28	chr9:103190600-103191600	Enhancers	Primary T helper naive cells from peripheral blood	blood
29	chr9:103190600-103191600	Enhancers	Primary T helper cells fromperipheralblood	blood
30	chr9:103190600-103191600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr9:103190600-103191600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr9:103190600-103191600	Enhancers	Psoas Muscle	Psoas
33	chr9:103190600-103191600	Flanking Active TSS	GM12878-XiMat	blood
34	chr9:103190600-103191600	Flanking Active TSS	NH-A	brain
35	chr9:103190600-103191600	Flanking Active TSS	NHDF-Ad	bronchial
36	chr9:103190600-103191600	Flanking Active TSS	NHLF	lung
37	chr9:103190600-103191800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
38	chr9:103190600-103191800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
39	chr9:103190600-103191800	Enhancers	Fetal Heart	heart
40	chr9:103190600-103191800	Enhancers	Right Atrium	heart
41	chr9:103190600-103191800	Flanking Active TSS	NHEK	skin
42	chr9:103190600-103192000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
43	chr9:103190600-103192000	Enhancers	Adipose Nuclei	Adipose
44	chr9:103190600-103192200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
45	chr9:103190600-103192400	Enhancers	Lung	lung
46	chr9:103190600-103197400	Weak transcription	Fetal Intestine Small	intestine
47	chr9:103190600-103214400	Weak transcription	Primary B cells from cord blood	blood
48	chr9:103190600-103224600	Weak transcription	H9 Cell Line	embryonic stem cell
49	chr9:103190800-103191600	Enhancers	H1 Cell Line	embryonic stem cell
50	chr9:103190800-103191600	Enhancers	HUES6 Cell Line	embryonic stem cell

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