Variant report

Variant	rs55693063
Chromosome Location	chr9:103269755-103269756
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:103268207..103270870-chr9:103356475..103358735,2	MCF-7	breast:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs11788011	0.87[EUR][1000 genomes]
rs11788918	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11789665	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11790432	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11792489	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11792747	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11792926	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11793359	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11793457	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11794817	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13283467	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13284662	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13286180	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13289939	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13292364	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13301847	0.82[AFR][1000 genomes]
rs13302460	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28759503	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs34138998	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34169031	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34234519	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34335039	0.82[AFR][1000 genomes]
rs34390257	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34555593	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34759817	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34779059	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34798346	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34999135	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35039632	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35255178	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35315430	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35388593	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35394420	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35495064	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35656901	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs36011161	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36055955	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs36105493	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7019804	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71507684	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs71507685	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs71507686	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs71507687	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7869547	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9696536	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893623	chr9:102648036-103405197	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:103238200-103274600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:103255200-103271000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr9:103255400-103277600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr9:103255600-103272400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr9:103255600-103272400	Weak transcription	Fetal Brain Female	brain
6	chr9:103255600-103301600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr9:103255800-103272400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr9:103256200-103287400	Weak transcription	HSMMtube	muscle
9	chr9:103256400-103271600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr9:103257000-103272400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr9:103257000-103289400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr9:103258600-103296400	Weak transcription	Brain Anterior Caudate	brain
13	chr9:103260400-103272200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr9:103260400-103272200	Weak transcription	Brain Substantia Nigra	brain
15	chr9:103260800-103287200	Weak transcription	Brain Cingulate Gyrus	brain
16	chr9:103261000-103272400	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr9:103261200-103287600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
18	chr9:103261600-103340200	Weak transcription	Left Ventricle	heart
19	chr9:103262600-103272400	Weak transcription	Fetal Muscle Leg	muscle
20	chr9:103263200-103312200	Weak transcription	Fetal Kidney	kidney
21	chr9:103263400-103273800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr9:103263400-103278200	Weak transcription	Fetal Lung	lung
23	chr9:103263400-103327600	Weak transcription	Aorta	Aorta
24	chr9:103264200-103271200	Weak transcription	Brain Germinal Matrix	brain
25	chr9:103264800-103277000	Strong transcription	HUES64 Cell Line	embryonic stem cell
26	chr9:103265200-103277800	Weak transcription	Ovary	ovary
27	chr9:103265400-103272400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr9:103265400-103279800	Weak transcription	Brain Hippocampus Middle	brain
29	chr9:103265600-103272400	Weak transcription	Brain Angular Gyrus	brain
30	chr9:103266800-103270800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr9:103267000-103270600	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr9:103267000-103271200	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr9:103267000-103271200	Weak transcription	Cortex derived primary cultured neurospheres	brain
34	chr9:103267200-103270600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr9:103268200-103270600	Weak transcription	HUES6 Cell Line	embryonic stem cell
36	chr9:103269200-103269800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr9:103269200-103270000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr9:103269400-103287000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
39	chr9:103269600-103270400	Enhancers	GM12878-XiMat	blood
40	chr9:103269600-103270600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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