Variant report

Variant	rs35656901
Chromosome Location	chr9:103195792-103195793
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:103124245..103126280-chr9:103194410..103197077,2	K562	blood:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11788011	0.80[EUR][1000 genomes]
rs11788918	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11789665	0.80[AMR][1000 genomes]
rs11790432	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11792489	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11792747	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11792926	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11793359	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11793457	0.80[AMR][1000 genomes]
rs11794817	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13283467	0.80[AMR][1000 genomes]
rs13284662	0.80[AMR][1000 genomes]
rs13286180	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13289939	0.80[AMR][1000 genomes]
rs13292364	0.80[AMR][1000 genomes]
rs13302460	0.80[AMR][1000 genomes]
rs28759503	0.80[AMR][1000 genomes]
rs34138998	0.80[AMR][1000 genomes]
rs34169031	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34234519	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34390257	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34555593	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34759817	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34779059	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34798346	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34999135	0.80[AMR][1000 genomes]
rs35039632	0.80[AMR][1000 genomes]
rs35255178	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35315430	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35388593	0.80[AMR][1000 genomes]
rs35394420	0.80[AMR][1000 genomes]
rs35495064	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs36011161	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs36055955	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs36105493	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55693063	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7019804	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs71507684	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs71507685	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs71507686	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs71507687	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7869547	0.80[AMR][1000 genomes]
rs9696536	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893623	chr9:102648036-103405197	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv825012	chr9:103152205-103256281	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv614955	chr9:103181596-103261227	ZNF genes & repeats Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:103190400-103206000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:103190400-103214200	Weak transcription	Thymus	Thymus
3	chr9:103190600-103197400	Weak transcription	Fetal Intestine Small	intestine
4	chr9:103190600-103214400	Weak transcription	Primary B cells from cord blood	blood
5	chr9:103190600-103224600	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr9:103190800-103200400	Weak transcription	Liver	Liver
7	chr9:103190800-103204000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr9:103190800-103204400	Weak transcription	Primary B cells from peripheral blood	blood
9	chr9:103190800-103206000	Weak transcription	Primary T cells from cord blood	blood
10	chr9:103190800-103206800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr9:103190800-103207200	Weak transcription	Fetal Lung	lung
12	chr9:103190800-103213200	Weak transcription	Primary hematopoietic stem cells	blood
13	chr9:103190800-103217600	Weak transcription	Fetal Intestine Large	intestine
14	chr9:103191000-103203400	Weak transcription	Fetal Muscle Trunk	muscle
15	chr9:103191000-103206600	Weak transcription	Colonic Mucosa	Colon
16	chr9:103191200-103204200	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr9:103191200-103214200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr9:103191400-103196000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr9:103191600-103199400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr9:103191600-103201200	Weak transcription	Fetal Muscle Leg	muscle
21	chr9:103191600-103202000	Weak transcription	Placenta	Placenta
22	chr9:103191600-103202400	Weak transcription	Small Intestine	intestine
23	chr9:103191600-103204200	Weak transcription	Ovary	ovary
24	chr9:103191600-103204400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
25	chr9:103191600-103204400	Weak transcription	Primary T helper cells fromperipheralblood	blood
26	chr9:103191600-103204400	Weak transcription	Gastric	stomach
27	chr9:103191600-103206600	Weak transcription	Aorta	Aorta
28	chr9:103191600-103209200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
29	chr9:103191600-103209200	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr9:103191600-103212800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr9:103191600-103213000	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr9:103191600-103214400	Weak transcription	Esophagus	oesophagus
33	chr9:103191800-103196000	Weak transcription	Right Atrium	heart
34	chr9:103191800-103197000	Weak transcription	Fetal Heart	heart
35	chr9:103191800-103202200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr9:103191800-103204200	Weak transcription	Primary T helper cells PMA-I stimulated	--
37	chr9:103191800-103204200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr9:103191800-103204200	Weak transcription	Fetal Stomach	stomach
39	chr9:103191800-103206000	Weak transcription	HUES48 Cell Line	embryonic stem cell
40	chr9:103191800-103206000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr9:103191800-103206000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr9:103191800-103217600	Weak transcription	Placenta Amnion	Placenta Amnion
43	chr9:103191800-103228000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr9:103192000-103195800	Weak transcription	K562	blood
45	chr9:103192000-103200400	Weak transcription	Brain Inferior Temporal Lobe	brain
46	chr9:103192000-103200400	Weak transcription	Skeletal Muscle Male	skeletal muscle
47	chr9:103192000-103204400	Weak transcription	Fetal Brain Female	brain
48	chr9:103192000-103206200	Weak transcription	Brain Angular Gyrus	brain
49	chr9:103192000-103206400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
50	chr9:103192000-103206400	Weak transcription	Brain Anterior Caudate	brain

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