Variant report

Variant	rs34798346
Chromosome Location	chr9:103180956-103180957
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:103178586..103181536-chr9:103184754..103186904,2	MCF-7	breast:
2	chr9:103179441..103181859-chr9:103182962..103185659,2	K562	blood:
3	chr9:103112367..103115104-chr9:103180612..103183941,3	K562	blood:
4	chr9:103174960..103177942-chr9:103180157..103183043,3	K562	blood:
5	chr9:103179513..103182499-chr9:103189400..103191115,2	K562	blood:

Variant related genes	Relation type
ENSG00000066697	Chromatin interaction
ENSG00000136891	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs11788918	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11789665	0.80[AMR][1000 genomes]
rs11790432	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11792489	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11792747	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11792926	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11793359	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11793457	0.80[AMR][1000 genomes]
rs11794817	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13283467	0.80[AMR][1000 genomes]
rs13284662	0.80[AMR][1000 genomes]
rs13286180	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13289939	0.80[AMR][1000 genomes]
rs13292364	0.80[AMR][1000 genomes]
rs13302460	0.80[AMR][1000 genomes]
rs28759503	0.80[AMR][1000 genomes]
rs34138998	0.80[AMR][1000 genomes]
rs34169031	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34234519	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34390257	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34555593	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34759817	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34779059	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34999135	0.80[AMR][1000 genomes]
rs35039632	0.80[AMR][1000 genomes]
rs35255178	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35315430	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35388593	0.80[AMR][1000 genomes]
rs35394420	0.80[AMR][1000 genomes]
rs35495064	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35656901	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs36011161	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs36055955	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs36105493	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55693063	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7019804	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs71507684	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs71507685	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs71507686	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs71507687	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7869547	0.80[AMR][1000 genomes]
rs9696536	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893623	chr9:102648036-103405197	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv825012	chr9:103152205-103256281	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:103174600-103188800	Weak transcription	Esophagus	oesophagus
2	chr9:103176800-103188000	Weak transcription	K562	blood
3	chr9:103180400-103188600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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