Variant report

Variant	rs71507685
Chromosome Location	chr9:103239077-103239078
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11788011	0.90[EUR][1000 genomes]
rs11788918	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11789665	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11790432	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11792489	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11792747	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11792926	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11793359	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11793457	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11794817	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13283467	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13284662	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13286180	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13289939	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13292364	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13302460	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28759503	0.80[AMR][1000 genomes]
rs34138998	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34169031	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34234519	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34390257	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34555593	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34759817	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34779059	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34798346	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34999135	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35039632	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35255178	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35315430	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35388593	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35394420	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35495064	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35656901	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs36011161	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs36055955	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36105493	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs55693063	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7019804	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs71507684	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71507686	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71507687	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7869547	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9696536	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893623	chr9:102648036-103405197	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv825012	chr9:103152205-103256281	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv614955	chr9:103181596-103261227	ZNF genes & repeats Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:103236600-103241800	Weak transcription	Psoas Muscle	Psoas
2	chr9:103237000-103251600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr9:103237200-103241800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr9:103237400-103239200	Weak transcription	NHDF-Ad	bronchial
5	chr9:103237600-103240400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr9:103238000-103240400	Weak transcription	Brain Angular Gyrus	brain
7	chr9:103238000-103240400	Weak transcription	Brain Cingulate Gyrus	brain
8	chr9:103238000-103248600	Weak transcription	Brain Hippocampus Middle	brain
9	chr9:103238200-103240400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr9:103238200-103242200	Weak transcription	Brain Germinal Matrix	brain
11	chr9:103238200-103249000	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr9:103238200-103251600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr9:103238200-103252000	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr9:103238200-103264200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr9:103238200-103274600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr9:103238400-103239800	Weak transcription	Fetal Brain Female	brain
17	chr9:103238400-103240200	Weak transcription	Brain Anterior Caudate	brain
18	chr9:103238400-103240400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr9:103238400-103241800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr9:103238400-103243200	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr9:103238400-103251400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr9:103238400-103251400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr9:103238400-103251800	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr9:103238600-103239200	Weak transcription	Fetal Brain Male	brain
25	chr9:103238600-103239400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr9:103238600-103240400	Weak transcription	Brain Substantia Nigra	brain
27	chr9:103238600-103242800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr9:103238600-103243200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
29	chr9:103238600-103251800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr9:103238800-103239400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr9:103238800-103240600	Weak transcription	HUES48 Cell Line	embryonic stem cell

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