Variant report

Variant	rs34138998
Chromosome Location	chr9:103289705-103289706
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:103100588..103103062-chr9:103287434..103290321,2	K562	blood:
2	chr9:103287837..103290104-chr9:103313873..103315627,2	K562	blood:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs11788350	0.80[AMR][1000 genomes]
rs11788918	0.80[AMR][1000 genomes]
rs11789665	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11790432	0.80[AMR][1000 genomes]
rs11791916	0.80[AMR][1000 genomes]
rs11792489	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11792747	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11792926	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11793144	0.80[AMR][1000 genomes]
rs11793359	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11793457	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11794817	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13283467	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13284662	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13286180	0.80[AMR][1000 genomes]
rs13289939	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13292364	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13294866	0.80[AMR][1000 genomes]
rs13301847	0.80[AMR][1000 genomes]
rs13302460	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28759503	0.80[AMR][1000 genomes]
rs34169031	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34234519	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34390257	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34555593	0.80[AMR][1000 genomes]
rs34759817	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34779059	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34798346	0.80[AMR][1000 genomes]
rs34999135	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35039632	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35255178	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35315430	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35388593	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35394420	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35495064	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35656901	0.80[AMR][1000 genomes]
rs35729051	0.80[AMR][1000 genomes]
rs36011161	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs36055955	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs36105493	0.80[AMR][1000 genomes]
rs55693063	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7019804	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs71507684	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs71507685	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs71507686	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs71507687	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7869547	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9696536	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893623	chr9:102648036-103405197	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:103255600-103301600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr9:103258600-103296400	Weak transcription	Brain Anterior Caudate	brain
3	chr9:103261600-103340200	Weak transcription	Left Ventricle	heart
4	chr9:103263200-103312200	Weak transcription	Fetal Kidney	kidney
5	chr9:103263400-103327600	Weak transcription	Aorta	Aorta
6	chr9:103270800-103290000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr9:103272600-103307000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr9:103273000-103303600	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr9:103273600-103337600	Weak transcription	NHDF-Ad	bronchial
10	chr9:103278400-103306400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr9:103278400-103333000	Weak transcription	Fetal Brain Male	brain
12	chr9:103279600-103312000	Weak transcription	HSMM	muscle
13	chr9:103280800-103296200	Weak transcription	Brain Hippocampus Middle	brain
14	chr9:103283400-103296400	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr9:103284400-103296400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr9:103286600-103290400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr9:103286800-103289800	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
18	chr9:103287600-103290400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr9:103287800-103290400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
20	chr9:103288400-103289800	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr9:103288400-103290400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
22	chr9:103288600-103290400	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
23	chr9:103289000-103290400	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr9:103289200-103289800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr9:103289200-103289800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
26	chr9:103289200-103289800	Active TSS	K562	blood
27	chr9:103289200-103290000	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
28	chr9:103289200-103290000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr9:103289200-103290000	Strong transcription	Brain Germinal Matrix	brain
30	chr9:103289400-103289800	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr9:103289400-103289800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr9:103289400-103289800	ZNF genes & repeats	Pancreas	Pancrea
33	chr9:103289400-103290000	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
34	chr9:103289400-103290000	Active TSS	Placenta	Placenta
35	chr9:103289400-103290200	Strong transcription	Fetal Brain Female	brain
36	chr9:103289400-103290400	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
37	chr9:103289400-103290400	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr9:103289600-103289800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
39	chr9:103289600-103290400	ZNF genes & repeats	Fetal Stomach	stomach

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