Variant report

Variant	rs13332870
Chromosome Location	chr16:48415145-48415146
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:48398121..48402229-chr16:48414201..48420573,11	MCF-7	breast:
2	chr16:48398562..48401765-chr16:48412536..48415889,3	MCF-7	breast:
3	chr16:48411112..48415935-chr16:48417584..48420654,6	MCF-7	breast:
4	chr16:48411748..48415998-chr16:48416243..48420831,11	K562	blood:
5	chr16:48406348..48408797-chr16:48412397..48415717,4	MCF-7	breast:
6	chr16:48396253..48404408-chr16:48411826..48421166,27	K562	blood:

Variant related genes	Relation type
ENSG00000196470	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs13335175	1.00[AMR][1000 genomes]
rs13336203	1.00[AMR][1000 genomes]
rs13336441	1.00[AMR][1000 genomes]
rs13336832	1.00[AMR][1000 genomes]
rs13337923	1.00[AMR][1000 genomes]
rs28361908	1.00[AMR][1000 genomes]
rs28379458	1.00[AMR][1000 genomes]
rs28473019	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28539217	1.00[AMR][1000 genomes]
rs28599555	1.00[AMR][1000 genomes]
rs28661941	1.00[AMR][1000 genomes]
rs28848294	1.00[AMR][1000 genomes]
rs9924578	0.90[AFR][1000 genomes]
rs9926437	1.00[AMR][1000 genomes]
rs9926749	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9927124	1.00[AMR][1000 genomes]
rs9928527	1.00[AMR][1000 genomes]
rs9929780	1.00[AMR][1000 genomes]
rs9930404	0.90[AFR][1000 genomes]
rs9931267	1.00[AMR][1000 genomes]
rs9931866	1.00[AMR][1000 genomes]
rs9932677	1.00[AMR][1000 genomes]
rs9933958	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9934175	1.00[AMR][1000 genomes]
rs9934459	1.00[AMR][1000 genomes]
rs9934918	1.00[AMR][1000 genomes]
rs9936494	1.00[AMR][1000 genomes]
rs9936636	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9936892	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9938115	1.00[AMR][1000 genomes]
rs9938350	1.00[AMR][1000 genomes]
rs9938594	1.00[AMR][1000 genomes]
rs9940237	1.00[AMR][1000 genomes]
rs9941354	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1061316	chr16:48264175-48594219	Weak transcription Strong transcription Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	esv1821072	chr16:48268318-48504364	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv833219	chr16:48290595-48459301	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv1061708	chr16:48304343-48482594	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
5	nsv542917	chr16:48304343-48482594	Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
6	esv2758424	chr16:48329437-48479754	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
7	esv2758645	chr16:48329437-48479754	ZNF genes & repeats Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
8	esv1837150	chr16:48375777-48470715	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
9	esv1802902	chr16:48394626-48419662	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	22 gene(s)	inside rSNPs	diseases
10	esv1836876	chr16:48395527-48459558	Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
11	esv1842331	chr16:48395527-48459558	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
12	nsv960007	chr16:48413351-48426696	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:48400600-48417600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr16:48400800-48417800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr16:48404800-48417200	Enhancers	Skeletal Muscle Male	skeletal muscle
4	chr16:48406400-48416800	Enhancers	Liver	Liver
5	chr16:48406600-48417200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr16:48407800-48417200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr16:48408000-48416600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr16:48409000-48417000	Weak transcription	Fetal Kidney	kidney
9	chr16:48409000-48417200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr16:48409200-48416800	Weak transcription	NHDF-Ad	bronchial
11	chr16:48409200-48417000	Weak transcription	NHLF	lung
12	chr16:48409200-48417200	Weak transcription	NH-A	brain
13	chr16:48409200-48417200	Weak transcription	Osteobl	bone
14	chr16:48409400-48416800	Weak transcription	HUVEC	blood vessel
15	chr16:48409400-48417800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr16:48410400-48417600	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr16:48411400-48416200	Enhancers	Sigmoid Colon	Sigmoid Colon
18	chr16:48411600-48416200	Enhancers	Placenta	Placenta
19	chr16:48411600-48416400	Weak transcription	HSMM	muscle
20	chr16:48411600-48417400	Enhancers	Primary B cells from cord blood	blood
21	chr16:48411800-48415200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr16:48411800-48417800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr16:48412000-48416800	Enhancers	HepG2	liver
24	chr16:48412000-48417000	Enhancers	Skeletal Muscle Female	skeletal muscle
25	chr16:48412200-48415200	Enhancers	Dnd41	blood
26	chr16:48412200-48416600	Enhancers	A549	lung
27	chr16:48412200-48416600	Enhancers	K562	blood
28	chr16:48412400-48415400	Enhancers	Brain Substantia Nigra	brain
29	chr16:48412400-48415600	Enhancers	Spleen	Spleen
30	chr16:48412400-48416000	Enhancers	Brain Cingulate Gyrus	brain
31	chr16:48412400-48416000	Enhancers	Brain Hippocampus Middle	brain
32	chr16:48412400-48416200	Enhancers	Primary B cells from peripheral blood	blood
33	chr16:48412600-48415600	Enhancers	Psoas Muscle	Psoas
34	chr16:48412600-48415800	Enhancers	iPS-18 Cell Line	embryonic stem cell
35	chr16:48412600-48416200	Enhancers	iPS-15b Cell Line	embryonic stem cell
36	chr16:48412600-48416200	Enhancers	Ovary	ovary
37	chr16:48412600-48416200	Enhancers	Pancreas	Pancrea
38	chr16:48412600-48416200	Enhancers	Right Ventricle	heart
39	chr16:48412600-48416400	Enhancers	Left Ventricle	heart
40	chr16:48412600-48416800	Enhancers	Duodenum Mucosa	Duodenum
41	chr16:48413000-48417200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
42	chr16:48413200-48417800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
43	chr16:48413400-48416400	Weak transcription	Pancreatic Islets	Pancreatic Islet
44	chr16:48413400-48416800	Weak transcription	Rectal Smooth Muscle	rectum
45	chr16:48413400-48417200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
46	chr16:48413400-48417200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr16:48413400-48417400	Weak transcription	Colonic Mucosa	Colon
48	chr16:48413400-48417600	Enhancers	Primary neutrophils fromperipheralblood	blood
49	chr16:48413400-48417600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
50	chr16:48413600-48415200	Enhancers	Monocytes-CD14+_RO01746	blood

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