Variant report

Variant	rs13336832
Chromosome Location	chr16:48311692-48311693
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:48310047..48313825-chr16:48313947..48317247,4	K562	blood:
2	chr16:48305138..48309259-chr16:48310005..48312409,3	K562	blood:
3	chr16:48305578..48309055-chr16:48310005..48312347,3	K562	blood:
4	chr16:48311363..48313825-chr16:48314630..48317247,2	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs12102896	1.00[AFR][1000 genomes]
rs13332870	1.00[AMR][1000 genomes]
rs13335175	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13336203	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13336441	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13337923	1.00[AMR][1000 genomes]
rs28361908	1.00[AMR][1000 genomes]
rs28379458	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28473019	1.00[AMR][1000 genomes]
rs28539217	1.00[AMR][1000 genomes]
rs28599555	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28661941	1.00[AMR][1000 genomes]
rs28848294	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9889104	1.00[AMR][1000 genomes]
rs9922477	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs9926437	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9926749	1.00[ASW][hapmap];1.00[AMR][1000 genomes]
rs9927124	1.00[AMR][1000 genomes]
rs9928527	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs9929780	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9931267	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs9931866	1.00[ASW][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs9932677	1.00[AMR][1000 genomes]
rs9933958	1.00[AMR][1000 genomes]
rs9934175	1.00[ASW][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9934459	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9934918	1.00[AMR][1000 genomes]
rs9936494	1.00[AMR][1000 genomes]
rs9936636	1.00[AMR][1000 genomes]
rs9936892	1.00[ASW][hapmap];1.00[AMR][1000 genomes]
rs9938115	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9938350	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs9938594	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9940237	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9941354	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1061316	chr16:48264175-48594219	Weak transcription Strong transcription Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	esv1821072	chr16:48268318-48504364	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv833219	chr16:48290595-48459301	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv1061708	chr16:48304343-48482594	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
5	nsv542917	chr16:48304343-48482594	Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:48279400-48312600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr16:48279600-48320200	Weak transcription	Spleen	Spleen
3	chr16:48281400-48313200	Weak transcription	Right Atrium	heart
4	chr16:48281800-48313200	Weak transcription	Psoas Muscle	Psoas
5	chr16:48286000-48313200	Strong transcription	Primary T helper cells fromperipheralblood	blood
6	chr16:48287400-48320200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr16:48289400-48313200	Weak transcription	Gastric	stomach
8	chr16:48289400-48320400	Weak transcription	Esophagus	oesophagus
9	chr16:48290600-48313800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr16:48292200-48313200	Weak transcription	Pancreas	Pancrea
11	chr16:48293800-48320400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr16:48294800-48320400	Weak transcription	Lung	lung
13	chr16:48297200-48323200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr16:48297600-48313200	Weak transcription	K562	blood
15	chr16:48297600-48318600	Strong transcription	Primary B cells from peripheral blood	blood
16	chr16:48297600-48319800	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr16:48297600-48321000	Weak transcription	Fetal Brain Male	brain
18	chr16:48297800-48312200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr16:48297800-48313200	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr16:48297800-48313200	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr16:48297800-48313200	Weak transcription	NHEK	skin
22	chr16:48297800-48319800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr16:48297800-48320800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr16:48297800-48320800	Weak transcription	Brain Germinal Matrix	brain
25	chr16:48297800-48320800	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr16:48297800-48320800	Weak transcription	Small Intestine	intestine
27	chr16:48299000-48320400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr16:48300200-48320200	Weak transcription	Fetal Stomach	stomach
29	chr16:48302200-48313400	Strong transcription	Primary monocytes fromperipheralblood	blood
30	chr16:48302800-48321000	Strong transcription	Monocytes-CD14+_RO01746	blood
31	chr16:48303000-48313400	Strong transcription	Primary T helper cells PMA-I stimulated	--
32	chr16:48303000-48314800	Strong transcription	Primary T cells fromperipheralblood	blood
33	chr16:48303000-48315200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr16:48303200-48312000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr16:48303400-48312400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr16:48303400-48314400	Strong transcription	Dnd41	blood
37	chr16:48303600-48312400	Strong transcription	Primary T cells from cord blood	blood
38	chr16:48303800-48313800	Strong transcription	Fetal Muscle Leg	muscle
39	chr16:48304400-48317000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr16:48304800-48312000	Weak transcription	A549	lung
41	chr16:48304800-48313200	Weak transcription	HUES6 Cell Line	embryonic stem cell
42	chr16:48304800-48313200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
43	chr16:48304800-48318400	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr16:48304800-48319200	Weak transcription	Hela-S3	cervix
45	chr16:48305200-48313200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr16:48305200-48328600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
47	chr16:48305400-48320400	Weak transcription	Stomach Smooth Muscle	stomach
48	chr16:48305600-48317000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr16:48306000-48317000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
50	chr16:48306800-48312600	Strong transcription	Primary B cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links