Variant report

Variant	rs9934918
Chromosome Location	chr16:48270623-48270624
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs13332870	1.00[AMR][1000 genomes]
rs13335175	1.00[AMR][1000 genomes]
rs13336203	1.00[AMR][1000 genomes]
rs13336441	1.00[AMR][1000 genomes]
rs13336832	1.00[AMR][1000 genomes]
rs13337923	1.00[AMR][1000 genomes]
rs28361908	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28379458	1.00[AMR][1000 genomes]
rs28473019	1.00[AMR][1000 genomes]
rs28539217	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28599555	1.00[AMR][1000 genomes]
rs28661941	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28848294	1.00[AMR][1000 genomes]
rs9889104	1.00[AMR][1000 genomes]
rs9922477	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9926437	1.00[AMR][1000 genomes]
rs9926749	1.00[AMR][1000 genomes]
rs9927124	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9928527	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9929780	1.00[AMR][1000 genomes]
rs9931267	1.00[AMR][1000 genomes]
rs9931866	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9932677	1.00[AMR][1000 genomes]
rs9933958	1.00[AMR][1000 genomes]
rs9934175	1.00[AMR][1000 genomes]
rs9934459	1.00[AMR][1000 genomes]
rs9936494	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9936636	1.00[AMR][1000 genomes]
rs9936892	1.00[AMR][1000 genomes]
rs9938115	1.00[AMR][1000 genomes]
rs9938350	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9938594	1.00[AMR][1000 genomes]
rs9940237	1.00[AMR][1000 genomes]
rs9941354	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1059259	chr16:48113396-48304404	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv542916	chr16:48113396-48304404	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1061316	chr16:48264175-48594219	Weak transcription Strong transcription Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
4	esv1821072	chr16:48268318-48504364	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:48269600-48272600	Enhancers	Liver	Liver
2	chr16:48270000-48270800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr16:48270000-48270800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr16:48270000-48272400	Enhancers	Fetal Heart	heart
5	chr16:48270200-48277600	Weak transcription	Pancreas	Pancrea
6	chr16:48270400-48272200	Weak transcription	Duodenum Mucosa	Duodenum
7	chr16:48270400-48272600	Enhancers	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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