Variant report

Variant	rs28661941
Chromosome Location	chr16:48209787-48209788
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs13332870	1.00[AMR][1000 genomes]
rs13335175	1.00[AMR][1000 genomes]
rs13336203	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13336441	1.00[AMR][1000 genomes]
rs13336832	1.00[AMR][1000 genomes]
rs13337923	1.00[AMR][1000 genomes]
rs28361908	1.00[AMR][1000 genomes]
rs28379458	1.00[AMR][1000 genomes]
rs28473019	1.00[AMR][1000 genomes]
rs28539217	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28599555	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28848294	1.00[AMR][1000 genomes]
rs9889104	1.00[AMR][1000 genomes]
rs9922477	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9926437	1.00[AMR][1000 genomes]
rs9926749	1.00[AMR][1000 genomes]
rs9927124	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9928527	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9929780	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9931267	1.00[AMR][1000 genomes]
rs9931866	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9932677	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9934175	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9934459	1.00[AMR][1000 genomes]
rs9934918	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9936494	1.00[AMR][1000 genomes]
rs9936636	1.00[AMR][1000 genomes]
rs9936892	1.00[AMR][1000 genomes]
rs9938115	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9938350	1.00[AMR][1000 genomes]
rs9938594	1.00[AMR][1000 genomes]
rs9940237	1.00[AMR][1000 genomes]
rs9941354	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1059259	chr16:48113396-48304404	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv542916	chr16:48113396-48304404	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:48199200-48226600	Weak transcription	Spleen	Spleen
2	chr16:48208000-48209800	Weak transcription	HepG2	liver
3	chr16:48209400-48214400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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