Variant report
| Variant | rs9932677 |
|---|---|
| Chromosome Location | chr16:48260080-48260081 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:2)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:2 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | CEBPB | chr16:48260078-48260103 | HepG2 | liver: | n/a | n/a |
| 2 | CEBPB | chr16:48259967-48260108 | K562 | blood: | n/a | chr16:48260043-48260054 |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ABCC11 | TF binding region |
rSNPs within LD-proxies of this variant (count:34)
| rs_ID | r2[population] |
|---|---|
| rs13332870 | 1.00[AMR][1000 genomes] |
| rs13335175 | 1.00[AMR][1000 genomes] |
| rs13336203 | 1.00[AMR][1000 genomes] |
| rs13336441 | 1.00[AMR][1000 genomes] |
| rs13336832 | 1.00[AMR][1000 genomes] |
| rs13337923 | 1.00[AMR][1000 genomes] |
| rs28361908 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28379458 | 1.00[AMR][1000 genomes] |
| rs28473019 | 1.00[AMR][1000 genomes] |
| rs28539217 | 1.00[AMR][1000 genomes] |
| rs28599555 | 1.00[AMR][1000 genomes] |
| rs28661941 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28848294 | 1.00[AMR][1000 genomes] |
| rs9889104 | 1.00[AMR][1000 genomes] |
| rs9922477 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9926437 | 1.00[AMR][1000 genomes] |
| rs9926749 | 1.00[AMR][1000 genomes] |
| rs9927124 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9928527 | 1.00[AMR][1000 genomes] |
| rs9929780 | 1.00[AMR][1000 genomes] |
| rs9931267 | 1.00[AMR][1000 genomes] |
| rs9931866 | 1.00[AMR][1000 genomes] |
| rs9933958 | 1.00[AMR][1000 genomes] |
| rs9934175 | 1.00[AMR][1000 genomes] |
| rs9934459 | 1.00[AMR][1000 genomes] |
| rs9934918 | 1.00[AMR][1000 genomes] |
| rs9936494 | 1.00[AMR][1000 genomes] |
| rs9936636 | 1.00[AMR][1000 genomes] |
| rs9936892 | 1.00[AMR][1000 genomes] |
| rs9938115 | 1.00[AMR][1000 genomes] |
| rs9938350 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9938594 | 1.00[AMR][1000 genomes] |
| rs9940237 | 1.00[AMR][1000 genomes] |
| rs9941354 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1059259 | chr16:48113396-48304404 | Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| 2 | nsv542916 | chr16:48113396-48304404 | Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr16:48259600-48263800 | Weak transcription | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
| 2 | chr16:48259800-48262400 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
