Variant report

Variant	rs9926437
Chromosome Location	chr16:48353598-48353599
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs12102896	1.00[AFR][1000 genomes]
rs13332870	1.00[AMR][1000 genomes]
rs13335175	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13336203	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13336441	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13336832	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13337923	1.00[AMR][1000 genomes]
rs28361908	1.00[AMR][1000 genomes]
rs28379458	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28473019	1.00[AMR][1000 genomes]
rs28539217	1.00[AMR][1000 genomes]
rs28599555	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28661941	1.00[AMR][1000 genomes]
rs28848294	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9889104	1.00[AMR][1000 genomes]
rs9922477	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs9926749	1.00[AMR][1000 genomes]
rs9927124	1.00[AMR][1000 genomes]
rs9928527	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs9929780	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9931267	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs9931866	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs9932677	1.00[AMR][1000 genomes]
rs9933958	1.00[AMR][1000 genomes]
rs9934175	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9934459	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9934918	1.00[AMR][1000 genomes]
rs9936494	1.00[AMR][1000 genomes]
rs9936636	1.00[AMR][1000 genomes]
rs9936892	1.00[AMR][1000 genomes]
rs9938115	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9938350	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs9938594	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9940237	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9941354	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1061316	chr16:48264175-48594219	Weak transcription Strong transcription Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	esv1821072	chr16:48268318-48504364	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv833219	chr16:48290595-48459301	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv1061708	chr16:48304343-48482594	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
5	nsv542917	chr16:48304343-48482594	Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
6	esv2758424	chr16:48329437-48479754	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
7	esv2758645	chr16:48329437-48479754	ZNF genes & repeats Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:48330400-48354600	Weak transcription	Stomach Mucosa	stomach
2	chr16:48334800-48361400	Strong transcription	Liver	Liver
3	chr16:48338600-48381200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr16:48339400-48368000	Weak transcription	Colonic Mucosa	Colon
5	chr16:48342200-48368000	Weak transcription	Rectal Smooth Muscle	rectum
6	chr16:48343400-48375600	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr16:48344600-48368200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr16:48345800-48363200	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr16:48346000-48355000	Weak transcription	Psoas Muscle	Psoas
10	chr16:48346600-48364200	Weak transcription	Brain Cingulate Gyrus	brain
11	chr16:48346600-48368200	Weak transcription	Colon Smooth Muscle	Colon
12	chr16:48346800-48368200	Weak transcription	A549	lung
13	chr16:48347000-48368000	Weak transcription	Hela-S3	cervix
14	chr16:48347000-48368000	Weak transcription	K562	blood
15	chr16:48347000-48368200	Weak transcription	Placenta	Placenta
16	chr16:48347000-48368200	Weak transcription	Gastric	stomach
17	chr16:48347000-48368400	Weak transcription	Esophagus	oesophagus
18	chr16:48347400-48360800	Weak transcription	Fetal Intestine Small	intestine
19	chr16:48347400-48368200	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr16:48347600-48360200	Weak transcription	Brain Substantia Nigra	brain
21	chr16:48347600-48364200	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr16:48347600-48364800	Weak transcription	Pancreas	Pancrea
23	chr16:48347600-48367400	Weak transcription	Fetal Muscle Trunk	muscle
24	chr16:48347600-48367800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr16:48347600-48368200	Weak transcription	Aorta	Aorta
26	chr16:48347600-48384800	Weak transcription	Fetal Kidney	kidney
27	chr16:48347800-48355600	Weak transcription	Fetal Muscle Leg	muscle
28	chr16:48347800-48356200	Weak transcription	Fetal Brain Female	brain
29	chr16:48347800-48367600	Weak transcription	Brain Germinal Matrix	brain
30	chr16:48347800-48367600	Weak transcription	Stomach Smooth Muscle	stomach
31	chr16:48349400-48355800	Weak transcription	Fetal Intestine Large	intestine
32	chr16:48349600-48354600	Weak transcription	HepG2	liver
33	chr16:48349600-48355200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr16:48350800-48353600	Enhancers	HUVEC	blood vessel
35	chr16:48350800-48353800	Enhancers	Primary T killer memory cells from peripheral blood	blood
36	chr16:48350800-48354400	Enhancers	Primary T helper cells fromperipheralblood	blood
37	chr16:48351000-48353600	Enhancers	Primary monocytes fromperipheralblood	blood
38	chr16:48351000-48353800	Enhancers	Thymus	Thymus
39	chr16:48351000-48354200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
40	chr16:48351400-48353800	Enhancers	Adipose Nuclei	Adipose
41	chr16:48351400-48354000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
42	chr16:48351400-48354000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr16:48351600-48353600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
44	chr16:48351600-48353600	Enhancers	Fetal Thymus	thymus
45	chr16:48351600-48353600	Enhancers	Skeletal Muscle Male	skeletal muscle
46	chr16:48351600-48355200	Enhancers	Primary T cells fromperipheralblood	blood
47	chr16:48351600-48364400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr16:48351600-48368200	Weak transcription	NHEK	skin
49	chr16:48351800-48354600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr16:48351800-48354800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links