Variant report

Variant	rs13334586
Chromosome Location	chr16:79890913-79890914
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:79890773..79893231-chr16:79899316..79902167,2	K562	blood:
2	chr16:79890476..79892006-chr16:79935047..79937129,2	K562	blood:

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11863270	1.00[ASN][1000 genomes]
rs11863675	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs13332329	1.00[ASN][1000 genomes]
rs13332616	1.00[ASN][1000 genomes]
rs13335122	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13335374	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13335810	1.00[ASN][1000 genomes]
rs13336598	1.00[ASN][1000 genomes]
rs13337310	1.00[ASN][1000 genomes]
rs16951431	1.00[ASN][1000 genomes]
rs16951578	1.00[ASN][1000 genomes]
rs28468662	1.00[ASN][1000 genomes]
rs28489853	1.00[ASN][1000 genomes]
rs28497693	1.00[ASN][1000 genomes]
rs28709974	1.00[ASN][1000 genomes]
rs4302050	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4305033	1.00[ASN][1000 genomes]
rs4329930	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56666506	1.00[ASN][1000 genomes]
rs58774115	1.00[ASN][1000 genomes]
rs59755459	1.00[ASN][1000 genomes]
rs61185428	1.00[ASN][1000 genomes]
rs61435284	1.00[ASN][1000 genomes]
rs7202646	1.00[ASN][1000 genomes]
rs73572277	1.00[ASN][1000 genomes]
rs73574088	1.00[ASN][1000 genomes]
rs8046846	1.00[ASN][1000 genomes]
rs8049943	1.00[ASN][1000 genomes]
rs8063890	1.00[ASN][1000 genomes]
rs9319544	1.00[ASN][1000 genomes]
rs9888949	1.00[ASN][1000 genomes]
rs9923324	1.00[ASN][1000 genomes]
rs9925223	1.00[ASN][1000 genomes]
rs9927136	1.00[ASN][1000 genomes]
rs9928839	1.00[ASN][1000 genomes]
rs9931561	1.00[ASN][1000 genomes]
rs9935211	1.00[CHB][hapmap];0.85[YRI][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9936731	1.00[ASN][1000 genomes]
rs9937192	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9938074	1.00[ASN][1000 genomes]
rs9939281	1.00[ASN][1000 genomes]
rs9939391	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9939719	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv530714	chr16:79661581-79925435	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv833297	chr16:79732501-79920419	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv1059511	chr16:79847882-79925436	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv542984	chr16:79847882-79925436	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv573290	chr16:79853267-79939504	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv573291	chr16:79881386-79931595	Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv906993	chr16:79883850-79923310	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv906994	chr16:79883850-79928186	Weak transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	esv3414241	chr16:79889951-79893649	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv34919	chr16:79889959-79923310	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:79890200-79891000	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood

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