Variant report
Variant | rs9939719 |
---|---|
Chromosome Location | chr16:79875468-79875469 |
allele | C/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
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(count:3 , 50 per page) page:
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rs_ID | r2[population] |
---|---|
rs11863270 | 1.00[ASN][1000 genomes] |
rs11863675 | 1.00[CHB][hapmap];1.00[ASN][1000 genomes] |
rs13332329 | 1.00[ASN][1000 genomes] |
rs13332616 | 1.00[ASN][1000 genomes] |
rs13334586 | 1.00[ASN][1000 genomes] |
rs13335122 | 1.00[ASN][1000 genomes] |
rs13335374 | 1.00[ASN][1000 genomes] |
rs13335810 | 0.83[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs13336598 | 1.00[ASN][1000 genomes] |
rs13337310 | 1.00[ASN][1000 genomes] |
rs16951431 | 1.00[ASN][1000 genomes] |
rs16951578 | 1.00[ASN][1000 genomes] |
rs28468662 | 0.83[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs28489853 | 1.00[ASN][1000 genomes] |
rs28497693 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs28709974 | 1.00[ASN][1000 genomes] |
rs4302050 | 1.00[ASN][1000 genomes] |
rs4305033 | 0.83[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs4329930 | 1.00[ASN][1000 genomes] |
rs56666506 | 1.00[ASN][1000 genomes] |
rs58774115 | 1.00[ASN][1000 genomes] |
rs59755459 | 0.83[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs61185428 | 1.00[ASN][1000 genomes] |
rs61435284 | 1.00[ASN][1000 genomes] |
rs7202646 | 1.00[ASN][1000 genomes] |
rs73572277 | 0.83[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs73574088 | 1.00[ASN][1000 genomes] |
rs8046846 | 0.83[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs8049943 | 0.83[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs8063890 | 0.83[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs9319544 | 0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs9888949 | 0.83[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs9923324 | 0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs9924737 | 1.00[EUR][1000 genomes] |
rs9925223 | 1.00[ASN][1000 genomes] |
rs9927136 | 1.00[ASN][1000 genomes] |
rs9928839 | 1.00[ASN][1000 genomes] |
rs9931561 | 0.83[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs9935211 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs9936731 | 1.00[ASN][1000 genomes] |
rs9937192 | 0.84[AMR][1000 genomes] |
rs9938074 | 1.00[ASN][1000 genomes] |
rs9939281 | 0.83[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs9939391 | 1.00[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv573285 | chr16:79158182-80127326 | Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 28 gene(s) | inside rSNPs | diseases |
2 | nsv530714 | chr16:79661581-79925435 | Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
3 | nsv833296 | chr16:79692236-79889727 | Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
4 | nsv833297 | chr16:79732501-79920419 | Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
5 | nsv1059511 | chr16:79847882-79925436 | Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
6 | nsv542984 | chr16:79847882-79925436 | Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
7 | nsv573290 | chr16:79853267-79939504 | Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
8 | nsv962206 | chr16:79872651-79878527 | Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr16:79870400-79877400 | Weak transcription | Thymus | Thymus |
2 | chr16:79874000-79880600 | Weak transcription | Right Atrium | heart |
3 | chr16:79875200-79876000 | Enhancers | Fetal Lung | lung |
4 | chr16:79875400-79876400 | Active TSS | K562 | blood |
5 | chr16:79875400-79876800 | Weak transcription | Fetal Stomach | stomach |