Variant report

Variant	rs9923324
Chromosome Location	chr16:79872399-79872400
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:79871932..79877574-chr16:79878123..79882364,6	K562	blood:
2	chr16:79870162..79872603-chr16:80005430..80007622,2	K562	blood:
3	chr16:79872368..79874855-chr16:79875498..79877925,2	MCF-7	breast:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs11863270	1.00[ASN][1000 genomes]
rs11863675	1.00[ASN][1000 genomes]
rs13330532	0.96[AFR][1000 genomes]
rs13332329	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13332616	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13334586	1.00[ASN][1000 genomes]
rs13335122	1.00[ASN][1000 genomes]
rs13335374	1.00[ASN][1000 genomes]
rs13335810	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13336598	1.00[ASN][1000 genomes]
rs13337310	1.00[ASN][1000 genomes]
rs16951431	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16951578	1.00[ASN][1000 genomes]
rs28468662	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28489853	1.00[ASN][1000 genomes]
rs28497693	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28709974	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4302050	1.00[ASN][1000 genomes]
rs4305033	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4329930	1.00[ASN][1000 genomes]
rs56666506	1.00[ASN][1000 genomes]
rs58774115	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59755459	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61185428	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61435284	1.00[ASN][1000 genomes]
rs7202646	1.00[ASN][1000 genomes]
rs73572277	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73574088	1.00[ASN][1000 genomes]
rs8046846	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs8049943	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs8063890	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9319544	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9888949	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9924737	0.98[EUR][1000 genomes]
rs9925223	1.00[ASN][1000 genomes]
rs9927136	1.00[ASN][1000 genomes]
rs9928839	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9931561	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9935211	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9936731	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9937192	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs9938074	1.00[ASN][1000 genomes]
rs9939281	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9939391	1.00[ASN][1000 genomes]
rs9939719	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv530714	chr16:79661581-79925435	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv833296	chr16:79692236-79889727	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv833297	chr16:79732501-79920419	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv1059511	chr16:79847882-79925436	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv542984	chr16:79847882-79925436	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv573290	chr16:79853267-79939504	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:79868800-79874600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr16:79869800-79872400	Enhancers	K562	blood
3	chr16:79869800-79873600	Weak transcription	Placenta	Placenta
4	chr16:79870400-79877400	Weak transcription	Thymus	Thymus
5	chr16:79870600-79873000	Weak transcription	Adipose Nuclei	Adipose
6	chr16:79871600-79874400	Enhancers	Fetal Muscle Leg	muscle
7	chr16:79872000-79872600	Active TSS	Fetal Lung	lung
8	chr16:79872000-79873000	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr16:79872000-79873000	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr16:79872000-79873000	Active TSS	Stomach Smooth Muscle	stomach
11	chr16:79872200-79872400	Flanking Active TSS	Fetal Stomach	stomach
12	chr16:79872200-79872400	Flanking Active TSS	Ovary	ovary
13	chr16:79872200-79872600	Bivalent/Poised TSS	Muscle Satellite Cultured Cells	--
14	chr16:79872200-79872600	Flanking Active TSS	Brain Hippocampus Middle	brain
15	chr16:79872200-79872600	Active TSS	Fetal Muscle Trunk	muscle
16	chr16:79872200-79872600	Active TSS	Psoas Muscle	Psoas
17	chr16:79872200-79872800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr16:79872200-79872800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr16:79872200-79872800	Active TSS	Brain Germinal Matrix	brain
20	chr16:79872200-79872800	Active TSS	Brain Substantia Nigra	brain
21	chr16:79872200-79872800	Active TSS	Skeletal Muscle Female	skeletal muscle
22	chr16:79872200-79872800	Active TSS	NHLF	lung
23	chr16:79872200-79873000	Enhancers	Cortex derived primary cultured neurospheres	brain
24	chr16:79872200-79873000	Active TSS	NHDF-Ad	bronchial

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