Variant report

Variant	rs9319544
Chromosome Location	chr16:79873021-79873022
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:79871932..79877574-chr16:79878123..79882364,6	K562	blood:
2	chr16:79872368..79874855-chr16:79875498..79877925,2	MCF-7	breast:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11863270	1.00[ASN][1000 genomes]
rs11863675	1.00[ASN][1000 genomes]
rs13332329	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13332616	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13334586	1.00[ASN][1000 genomes]
rs13335122	1.00[ASN][1000 genomes]
rs13335374	1.00[ASN][1000 genomes]
rs13335810	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13336598	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13337310	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16951431	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16951578	1.00[ASN][1000 genomes]
rs28468662	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28489853	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28497693	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28709974	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4302050	1.00[ASN][1000 genomes]
rs4305033	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4329930	1.00[ASN][1000 genomes]
rs56666506	1.00[ASN][1000 genomes]
rs58774115	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59755459	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61185428	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61435284	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7202646	1.00[ASN][1000 genomes]
rs73572277	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73574088	1.00[ASN][1000 genomes]
rs8046846	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs8049943	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs8063890	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9888949	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9923324	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9924737	0.98[EUR][1000 genomes]
rs9925223	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9927136	1.00[ASN][1000 genomes]
rs9928839	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9931561	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9935211	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9936731	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9937192	0.83[AMR][1000 genomes]
rs9938074	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9939281	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9939391	1.00[ASN][1000 genomes]
rs9939719	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv530714	chr16:79661581-79925435	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv833296	chr16:79692236-79889727	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv833297	chr16:79732501-79920419	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv1059511	chr16:79847882-79925436	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv542984	chr16:79847882-79925436	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv573290	chr16:79853267-79939504	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv962206	chr16:79872651-79878527	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:79868800-79874600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr16:79869800-79873600	Weak transcription	Placenta	Placenta
3	chr16:79870400-79877400	Weak transcription	Thymus	Thymus
4	chr16:79871600-79874400	Enhancers	Fetal Muscle Leg	muscle
5	chr16:79872400-79873400	Enhancers	Fetal Brain Female	brain
6	chr16:79872400-79874000	Enhancers	Fetal Intestine Small	intestine
7	chr16:79872400-79874800	Weak transcription	K562	blood
8	chr16:79872600-79873200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr16:79872600-79873200	Bivalent Enhancer	Brain Anterior Caudate	brain
10	chr16:79872600-79873400	Weak transcription	Fetal Muscle Trunk	muscle
11	chr16:79872600-79874400	Enhancers	Fetal Heart	heart
12	chr16:79872600-79875000	Enhancers	Rectal Smooth Muscle	rectum
13	chr16:79872800-79873400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr16:79872800-79874600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr16:79872800-79874600	Enhancers	Colon Smooth Muscle	Colon
16	chr16:79872800-79875400	Enhancers	Fetal Stomach	stomach
17	chr16:79873000-79873200	Bivalent Enhancer	Brain Hippocampus Middle	brain
18	chr16:79873000-79873400	Enhancers	Adipose Nuclei	Adipose
19	chr16:79873000-79873600	Enhancers	Fetal Lung	lung
20	chr16:79873000-79873800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
21	chr16:79873000-79874000	Enhancers	Brain Substantia Nigra	brain
22	chr16:79873000-79874000	Enhancers	Fetal Intestine Large	intestine
23	chr16:79873000-79874000	Enhancers	Right Atrium	heart
24	chr16:79873000-79874400	Enhancers	Stomach Smooth Muscle	stomach
25	chr16:79873000-79874600	Enhancers	Ovary	ovary
26	chr16:79873000-79875000	Enhancers	Brain Germinal Matrix	brain
27	chr16:79873000-79875200	Enhancers	Duodenum Smooth Muscle	Duodenum

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