Variant report

Variant	rs9935211
Chromosome Location	chr16:79883076-79883077
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:79879070..79882404-chr16:79882481..79885760,4	K562	blood:
2	chr16:79881818..79884623-chr16:80099002..80101726,2	K562	blood:
3	chr16:79876074..79877931-chr16:79879588..79883797,3	K562	blood:
4	chr16:79877269..79880011-chr16:79882461..79884349,2	K562	blood:

Variant related genes	Relation type
ENSG00000260706	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11863270	1.00[ASN][1000 genomes]
rs11863675	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs13332329	1.00[ASN][1000 genomes]
rs13332616	1.00[ASN][1000 genomes]
rs13334586	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13335122	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13335374	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13335810	1.00[ASN][1000 genomes]
rs13336598	1.00[ASN][1000 genomes]
rs13337310	1.00[ASN][1000 genomes]
rs16951431	1.00[ASN][1000 genomes]
rs16951578	1.00[ASN][1000 genomes]
rs28468662	1.00[ASN][1000 genomes]
rs28489853	1.00[ASN][1000 genomes]
rs28497693	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28709974	1.00[ASN][1000 genomes]
rs4302050	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4305033	1.00[ASN][1000 genomes]
rs4329930	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56666506	1.00[ASN][1000 genomes]
rs58774115	1.00[ASN][1000 genomes]
rs59755459	1.00[ASN][1000 genomes]
rs61185428	1.00[ASN][1000 genomes]
rs61435284	1.00[ASN][1000 genomes]
rs7202646	1.00[ASN][1000 genomes]
rs73572277	1.00[ASN][1000 genomes]
rs73574088	1.00[ASN][1000 genomes]
rs8046846	1.00[ASN][1000 genomes]
rs8049943	1.00[ASN][1000 genomes]
rs8063890	1.00[ASN][1000 genomes]
rs9319544	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9888949	1.00[ASN][1000 genomes]
rs9923324	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9925223	1.00[ASN][1000 genomes]
rs9927136	1.00[ASN][1000 genomes]
rs9928839	1.00[ASN][1000 genomes]
rs9931561	1.00[ASN][1000 genomes]
rs9936731	1.00[ASN][1000 genomes]
rs9937192	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9938074	1.00[ASN][1000 genomes]
rs9939281	1.00[ASN][1000 genomes]
rs9939391	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9939719	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv530714	chr16:79661581-79925435	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv833296	chr16:79692236-79889727	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv833297	chr16:79732501-79920419	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv1059511	chr16:79847882-79925436	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv542984	chr16:79847882-79925436	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv573290	chr16:79853267-79939504	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv573291	chr16:79881386-79931595	Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:79879600-79885200	Enhancers	Thymus	Thymus
2	chr16:79879800-79884600	Enhancers	Fetal Thymus	thymus
3	chr16:79880000-79883400	Weak transcription	Primary T cells from cord blood	blood
4	chr16:79880600-79884800	Enhancers	NHEK	skin
5	chr16:79880800-79883600	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr16:79880800-79885200	Enhancers	Colon Smooth Muscle	Colon
7	chr16:79881400-79883200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr16:79882200-79883400	Enhancers	Esophagus	oesophagus
9	chr16:79882600-79883200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
10	chr16:79882600-79883200	Enhancers	Placenta Amnion	Placenta Amnion
11	chr16:79882800-79883200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr16:79882800-79883200	Enhancers	Duodenum Mucosa	Duodenum
13	chr16:79882800-79883600	Weak transcription	Fetal Lung	lung
14	chr16:79882800-79883600	Enhancers	Placenta	Placenta
15	chr16:79882800-79883600	Bivalent Enhancer	Fetal Stomach	stomach
16	chr16:79882800-79883800	Enhancers	Fetal Intestine Large	intestine
17	chr16:79882800-79883800	Enhancers	Fetal Intestine Small	intestine
18	chr16:79883000-79883200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr16:79883000-79883200	Enhancers	HMEC	breast
20	chr16:79883000-79883400	Enhancers	Gastric	stomach
21	chr16:79883000-79883600	Enhancers	Lung	lung
22	chr16:79883000-79884000	Enhancers	GM12878-XiMat	blood

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