Variant report

Variant	rs28489853
Chromosome Location	chr16:79877338-79877339
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr16:79876074..79877931-chr16:79879588..79883797,3	K562	blood:
2	chr16:79876296..79878521-chr16:79970090..79972829,2	K562	blood:
3	chr16:79797845..79800017-chr16:79875232..79877671,2	K562	blood:
4	chr16:79870617..79872194-chr16:79875627..79877913,2	K562	blood:
5	chr16:79871932..79877574-chr16:79878123..79882364,6	K562	blood:
6	chr16:79872368..79874855-chr16:79875498..79877925,2	MCF-7	breast:
7	chr16:79877269..79880011-chr16:79882461..79884349,2	K562	blood:
8	chr16:79869480..79871405-chr16:79876316..79879081,2	K562	blood:
9	chr16:79875829..79877990-chr16:79901353..79904058,2	K562	blood:

No data

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11860044	0.96[EUR][1000 genomes]
rs11863270	1.00[ASN][1000 genomes]
rs11863675	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13332329	1.00[ASN][1000 genomes]
rs13332616	1.00[ASN][1000 genomes]
rs13334586	1.00[ASN][1000 genomes]
rs13335122	1.00[ASN][1000 genomes]
rs13335374	1.00[ASN][1000 genomes]
rs13335810	1.00[ASN][1000 genomes]
rs13336598	1.00[ASN][1000 genomes]
rs13337310	1.00[ASN][1000 genomes]
rs16951431	1.00[ASN][1000 genomes]
rs16951578	1.00[ASN][1000 genomes]
rs28468662	1.00[ASN][1000 genomes]
rs28497693	1.00[ASN][1000 genomes]
rs28709974	1.00[ASN][1000 genomes]
rs4302050	1.00[ASN][1000 genomes]
rs4305033	1.00[ASN][1000 genomes]
rs4329930	1.00[ASN][1000 genomes]
rs56666506	1.00[ASN][1000 genomes]
rs58774115	1.00[ASN][1000 genomes]
rs59755459	1.00[ASN][1000 genomes]
rs61185428	1.00[ASN][1000 genomes]
rs61435284	1.00[ASN][1000 genomes]
rs7202646	1.00[ASN][1000 genomes]
rs73572277	1.00[ASN][1000 genomes]
rs73574088	1.00[ASN][1000 genomes]
rs8046846	1.00[ASN][1000 genomes]
rs8049943	1.00[ASN][1000 genomes]
rs8063890	1.00[ASN][1000 genomes]
rs9319544	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9888949	1.00[ASN][1000 genomes]
rs9923324	1.00[ASN][1000 genomes]
rs9925223	1.00[ASN][1000 genomes]
rs9927136	1.00[ASN][1000 genomes]
rs9928839	1.00[ASN][1000 genomes]
rs9931561	1.00[ASN][1000 genomes]
rs9935211	1.00[ASN][1000 genomes]
rs9936731	1.00[ASN][1000 genomes]
rs9938074	1.00[ASN][1000 genomes]
rs9939281	1.00[ASN][1000 genomes]
rs9939391	1.00[ASN][1000 genomes]
rs9939719	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv530714	chr16:79661581-79925435	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv833296	chr16:79692236-79889727	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv833297	chr16:79732501-79920419	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv1059511	chr16:79847882-79925436	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv542984	chr16:79847882-79925436	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv573290	chr16:79853267-79939504	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv962206	chr16:79872651-79878527	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:79870400-79877400	Weak transcription	Thymus	Thymus
2	chr16:79874000-79880600	Weak transcription	Right Atrium	heart
3	chr16:79876000-79882400	Weak transcription	Fetal Lung	lung
4	chr16:79876400-79880200	Flanking Active TSS	K562	blood
5	chr16:79876800-79879200	Enhancers	Fetal Stomach	stomach
6	chr16:79877200-79877400	Enhancers	GM12878-XiMat	blood

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