Variant report

Variant	rs13411087
Chromosome Location	chr2:210372777-210372778
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10179969	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10207071	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10207360	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11680789	0.94[CEU][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12327904	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12467717	0.95[CEU][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1396777	0.87[CEU][hapmap];0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17236857	0.94[CEU][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2219084	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2365661	0.95[CEU][hapmap];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62213450	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62213452	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62213453	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834519	chr2:210271017-210400153	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:210361800-210376400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr2:210363600-210378400	Weak transcription	Brain Germinal Matrix	brain
3	chr2:210364600-210387600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr2:210364600-210392200	Weak transcription	Pancreas	Pancrea
5	chr2:210366600-210387800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr2:210368600-210372800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr2:210369800-210377400	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr2:210371400-210372800	Weak transcription	HepG2	liver
9	chr2:210371400-210373400	Enhancers	Liver	Liver
10	chr2:210371400-210391000	Weak transcription	Aorta	Aorta
11	chr2:210371600-210374400	Enhancers	Pancreatic Islets	Pancreatic Islet
12	chr2:210371800-210377400	Weak transcription	Fetal Brain Female	brain
13	chr2:210372000-210373400	Enhancers	HUVEC	blood vessel
14	chr2:210372400-210372800	Enhancers	A549	lung
15	chr2:210372600-210373000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr2:210372600-210373200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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