Variant report

Variant	rs1396777
Chromosome Location	chr2:210388253-210388254
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10179969	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10207071	0.88[CEU][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10207360	0.86[CEU][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11680789	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12327904	0.86[CEU][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12467717	0.81[CEU][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13411087	0.87[CEU][hapmap];0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17236857	0.81[CEU][hapmap];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2219084	0.88[CEU][hapmap];0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2365661	0.81[CEU][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62213450	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62213452	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62213453	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834519	chr2:210271017-210400153	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:210364600-210392200	Weak transcription	Pancreas	Pancrea
2	chr2:210371400-210391000	Weak transcription	Aorta	Aorta
3	chr2:210378800-210390200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr2:210382200-210391600	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr2:210383000-210391000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr2:210384000-210388600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr2:210386800-210389600	Enhancers	Fetal Brain Male	brain
8	chr2:210387000-210389000	Enhancers	Fetal Brain Female	brain
9	chr2:210387000-210391600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr2:210387200-210389800	Enhancers	Brain Germinal Matrix	brain
11	chr2:210387600-210388800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr2:210387800-210388400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr2:210387800-210388400	Enhancers	Brain Cingulate Gyrus	brain
14	chr2:210387800-210388800	Enhancers	NHDF-Ad	bronchial
15	chr2:210387800-210392600	Enhancers	Primary B cells from peripheral blood	blood
16	chr2:210388000-210388400	Enhancers	Brain Inferior Temporal Lobe	brain
17	chr2:210388000-210388600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr2:210388000-210389600	Enhancers	Brain Anterior Caudate	brain
19	chr2:210388000-210390200	Enhancers	Primary B cells from cord blood	blood
20	chr2:210388200-210388400	Enhancers	Pancreatic Islets	Pancreatic Islet
21	chr2:210388200-210388400	Enhancers	Ovary	ovary
22	chr2:210388200-210388400	Flanking Active TSS	NH-A	brain
23	chr2:210388200-210389200	Enhancers	Brain Substantia Nigra	brain
24	chr2:210388200-210390000	Enhancers	HUVEC	blood vessel
25	chr2:210388200-210390800	Enhancers	GM12878-XiMat	blood
26	chr2:210388200-210391000	Enhancers	Muscle Satellite Cultured Cells	--

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