Variant report

Variant	rs2219084
Chromosome Location	chr2:210359973-210359974
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10179969	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10207071	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10207360	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11680789	0.95[CEU][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12327904	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12467717	0.95[CEU][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13411087	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13425141	0.82[CEU][hapmap]
rs1396777	0.88[CEU][hapmap];0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17236857	0.95[CEU][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17726677	0.82[CEU][hapmap]
rs17726713	0.82[CEU][hapmap]
rs2365661	0.95[CEU][hapmap];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2886434	0.82[CEU][hapmap]
rs62213450	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62213452	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62213453	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7355281	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834518	chr2:210204958-210372744	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv834519	chr2:210271017-210400153	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:210339200-210360000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr2:210354200-210360000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr2:210358600-210362000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr2:210359000-210360000	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
5	chr2:210359200-210361800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr2:210359400-210361000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr2:210359600-210360400	Enhancers	HMEC	breast
8	chr2:210359600-210362200	Enhancers	Hela-S3	cervix
9	chr2:210359800-210360000	ZNF genes & repeats	Brain Germinal Matrix	brain
10	chr2:210359800-210360200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr2:210359800-210360200	Flanking Active TSS	Left Ventricle	heart
12	chr2:210359800-210360200	Enhancers	Right Atrium	heart
13	chr2:210359800-210360400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr2:210359800-210360400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr2:210359800-210360400	Active TSS	Adipose Nuclei	Adipose
16	chr2:210359800-210360400	Enhancers	Pancreas	Pancrea
17	chr2:210359800-210360400	Flanking Active TSS	HUVEC	blood vessel
18	chr2:210359800-210360600	Enhancers	Muscle Satellite Cultured Cells	--
19	chr2:210359800-210361200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr2:210359800-210361400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr2:210359800-210361600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr2:210359800-210361600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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