Variant report

Variant	rs2365661
Chromosome Location	chr2:210391837-210391838
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10179969	0.92[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10207071	0.95[CEU][hapmap];0.82[YRI][hapmap];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10207360	0.95[CEU][hapmap];0.82[YRI][hapmap];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11680789	0.90[CEU][hapmap];1.00[MEX][hapmap];0.90[AMR][1000 genomes]
rs12327904	0.89[ASW][hapmap];0.95[CEU][hapmap];0.81[GIH][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.82[YRI][hapmap];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12467717	0.90[CEU][hapmap];0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs13411087	0.95[CEU][hapmap];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1396777	0.81[CEU][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17236857	0.90[CEU][hapmap];0.92[AMR][1000 genomes]
rs2219084	0.95[CEU][hapmap];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62213450	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62213452	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62213453	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834519	chr2:210271017-210400153	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:210364600-210392200	Weak transcription	Pancreas	Pancrea
2	chr2:210387800-210392600	Enhancers	Primary B cells from peripheral blood	blood
3	chr2:210388400-210392200	Weak transcription	Brain Cingulate Gyrus	brain
4	chr2:210388400-210392200	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr2:210388400-210402200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr2:210390000-210392000	Enhancers	Dnd41	blood
7	chr2:210390200-210392400	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr2:210390600-210392600	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr2:210390800-210392000	Enhancers	Fetal Brain Female	brain
10	chr2:210391000-210392000	Flanking Active TSS	NHDF-Ad	bronchial
11	chr2:210391000-210394800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr2:210391400-210392000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
13	chr2:210391400-210392600	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr2:210391600-210392000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr2:210391600-210392000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr2:210391600-210392000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr2:210391600-210392000	Enhancers	Primary T cells from cord blood	blood
18	chr2:210391600-210392000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr2:210391600-210392000	Enhancers	Thymus	Thymus
20	chr2:210391600-210392200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr2:210391600-210392400	Enhancers	Primary hematopoietic stem cells short term culture	blood
22	chr2:210391600-210392400	Enhancers	Skeletal Muscle Male	skeletal muscle
23	chr2:210391600-210392400	Enhancers	HSMMtube	muscle
24	chr2:210391600-210392600	Enhancers	GM12878-XiMat	blood
25	chr2:210391600-210396000	Weak transcription	NHLF	lung
26	chr2:210391600-210398600	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr2:210391800-210392000	Enhancers	Adipose Nuclei	Adipose
28	chr2:210391800-210392000	Weak transcription	Aorta	Aorta
29	chr2:210391800-210392000	Flanking Active TSS	Stomach Smooth Muscle	stomach
30	chr2:210391800-210392000	Enhancers	Osteobl	bone
31	chr2:210391800-210392200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr2:210391800-210392400	Enhancers	Primary hematopoietic stem cells	blood
33	chr2:210391800-210392400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr2:210391800-210392400	Enhancers	Muscle Satellite Cultured Cells	--
35	chr2:210391800-210392400	Enhancers	Ovary	ovary
36	chr2:210391800-210392400	Enhancers	HUVEC	blood vessel
37	chr2:210391800-210393000	Enhancers	Primary B cells from cord blood	blood
38	chr2:210391800-210393400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr2:210391800-210395000	Weak transcription	Pancreatic Islets	Pancreatic Islet

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