Variant report

Variant	rs62213452
Chromosome Location	chr2:210380152-210380153
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10179969	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10207071	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10207360	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11680789	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12327904	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12467717	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13411087	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1396777	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17236857	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2219084	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2365661	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62213450	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62213453	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834519	chr2:210271017-210400153	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:210364600-210387600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr2:210364600-210392200	Weak transcription	Pancreas	Pancrea
3	chr2:210366600-210387800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr2:210371400-210391000	Weak transcription	Aorta	Aorta
5	chr2:210372800-210381000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr2:210378000-210380200	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr2:210378000-210384000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr2:210378800-210383200	Weak transcription	Brain Germinal Matrix	brain
9	chr2:210378800-210384000	Weak transcription	Fetal Brain Female	brain
10	chr2:210378800-210385800	Weak transcription	Fetal Brain Male	brain
11	chr2:210378800-210390200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr2:210379400-210382000	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr2:210380000-210381000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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