Variant report

Variant	rs1341759
Chromosome Location	chr6:26195502-26195503
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:130)
CpG islands
(count:61)
Chromatin interactive
region (count:9)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:130 , 50 per page) page: 1 2 3

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:26195405-26197856	GM12891	blood:	n/a	n/a
2	POLR2A	chr6:26193825-26201103	K562	blood:	n/a	n/a
3	CBX3	chr6:26193283-26196546	K562	blood:	n/a	n/a
4	POLR2A	chr6:26187684-26208312	K562	blood:	n/a	n/a
5	POLR2A	chr6:26195351-26200889	H1-hESC	embryonic stem cell:	n/a	n/a
6	ELF1	chr6:26195429-26195957	MCF-7	breast:	n/a	n/a
7	ATF2	chr6:26194955-26200949	H1-hESC	embryonic stem cell:	n/a	n/a
8	SP2	chr6:26195475-26195951	HepG2	liver:	n/a	chr6:26195670-26195693
9	EGR1	chr6:26194439-26196463	K562	blood:	n/a	n/a
10	HEY1	chr6:26195437-26196049	HepG2	liver:	n/a	n/a
11	BCLAF1	chr6:26192611-26200894	K562	blood:	n/a	n/a
12	POLR2A	chr6:26195442-26197906	Hela-S3	cervix:	n/a	n/a
13	TAF1	chr6:26195493-26196180	PFSK-1	brain:	n/a	n/a
14	ATF2	chr6:26195462-26195983	GM12878	blood:	n/a	n/a
15	POLR2A	chr6:26195420-26197887	GM12892	blood:	n/a	n/a
16	ELF1	chr6:26195455-26196055	HepG2	liver:	n/a	n/a
17	MBD4	chr6:26195475-26196143	HepG2	liver:	n/a	n/a
18	MEF2A	chr6:26194135-26196193	K562	blood:	n/a	chr6:26195361-26195382 chr6:26195194-26195209 chr6:26195365-26195376 chr6:26195364-26195375 chr6:26195361-26195382 chr6:26195366-26195375 chr6:26195363-26195378 chr6:26195362-26195378
19	POLR2A	chr6:26195471-26195856	MCF10A-Er-Src	breast:	n/a	n/a
20	RUNX3	chr6:26195501-26196442	GM12878	blood:	n/a	n/a
21	CREB1	chr6:26195413-26196136	H1-hESC	embryonic stem cell:	n/a	n/a
22	POU2F2	chr6:26195495-26197894	GM12878	blood:	n/a	chr6:26196504-26196512
23	POLR2A	chr6:26195423-26197907	HepG2	liver:	n/a	n/a
24	CREB1	chr6:26195402-26197980	HepG2	liver:	n/a	chr6:26197774-26197787
25	PML	chr6:26193184-26200952	K562	blood:	n/a	n/a
26	ZNF384	chr6:26195363-26196694	GM12878	blood:	n/a	n/a
27	POLR2A	chr6:26195424-26196019	HCT-116	colon:	n/a	n/a
28	TAF7	chr6:26194455-26200989	H1-hESC	embryonic stem cell:	n/a	n/a
29	BCLAF1	chr6:26195409-26196049	GM12878	blood:	n/a	n/a
30	TEAD4	chr6:26193268-26200973	K562	blood:	n/a	n/a
31	ETS1	chr6:26195494-26196193	K562	blood:	n/a	n/a
32	MAX	chr6:26195500-26195890	SK-N-SH	brain:	n/a	n/a
33	TBL1XR1	chr6:26194486-26196087	K562	blood:	n/a	n/a
34	SP1	chr6:26195495-26195860	GM12878	blood:	n/a	chr6:26195685-26195706
35	NFIC	chr6:26195431-26200718	GM12878	blood:	n/a	chr6:26195653-26195669
36	POLR2A	chr6:26195432-26197773	GM12891	blood:	n/a	n/a
37	SP1	chr6:26195451-26195963	A549	lung:	n/a	chr6:26195685-26195706
38	POLR2A	chr6:26195341-26200934	HL-60	blood:	n/a	n/a
39	SIN3AK20	chr6:26195415-26196167	MCF-7	breast:	n/a	n/a
40	POLR2A	chr6:26195499-26197893	GM12892	blood:	n/a	n/a
41	NR2F2	chr6:26195472-26196143	K562	blood:	n/a	n/a
42	POLR2A	chr6:26195326-26200683	GM12878	blood:	n/a	n/a
43	CREB1	chr6:26195390-26196676	K562	blood:	n/a	n/a
44	POLR2A	chr6:26192524-26200729	K562	blood:	n/a	n/a
45	CHD1	chr6:26194887-26201053	H1-hESC	embryonic stem cell:	n/a	n/a
46	CREB1	chr6:26195338-26198048	GM12878	blood:	n/a	chr6:26197774-26197787
47	NFIC	chr6:26195420-26196033	GM12878	blood:	n/a	chr6:26195653-26195669
48	POLR2A	chr6:26195452-26197845	HL-60	blood:	n/a	n/a
49	POLR2A	chr6:26195440-26197859	GM12892	blood:	n/a	n/a
50	STAT3	chr6:26195308-26195882	GM12878	blood:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:26195488-26195538	HRE	kidney:	n/a
2	chr6:26195488-26195538	NHBE	bronchial:	n/a
3	chr6:26195488-26195538	GM12891	blood:	n/a
4	chr6:26195488-26195538	MCF10A-Er-Src	breast:	n/a
5	chr6:26195488-26195538	AoSMC	blood vessel:	n/a
6	chr6:26195488-26195538	HEEpiC	esophagus:	n/a
7	chr6:26195488-26195538	HIPEpiC	eye:	n/a
8	chr6:26195488-26195538	IMR90	lung:	fetal
9	chr6:26195488-26195538	PrEC	prostate:	n/a
10	chr6:26195488-26195538	Jurkat	blood:	n/a
11	chr6:26195488-26195538	SK-N-SH	brain:	n/a
12	chr6:26195488-26195538	NH-A	brain:	n/a
13	chr6:26195488-26195538	SAEC	small airway:	n/a
14	chr6:26195488-26195538	HCT-116	colon:	n/a
15	chr6:26195488-26195538	ovcar-3	ovarian:	n/a
16	chr6:26195488-26195538	AG09309	skin:	n/a
17	chr6:26195488-26195538	AG09319	gingival:	n/a
18	chr6:26195488-26195538	BJ	skin:	n/a
19	chr6:26195488-26195538	ECC-1	luminal epithelium:	n/a
20	chr6:26195488-26195538	AG10803	skin:	n/a
21	chr6:26195488-26195538	Caco-2	colon:	n/a
22	chr6:26195488-26195538	A549	lung:	n/a
23	chr6:26195488-26195538	HCPEpiC	choroid plexus:	n/a
24	chr6:26195488-26195538	NB4	blood:	n/a
25	chr6:26195488-26195538	HepG2	liver:	n/a
26	chr6:26195488-26195538	HEK293	kidney:	embryo
27	chr6:26195488-26195538	HAEpiC	amniotic membrane:	n/a
28	chr6:26195488-26195538	MCF-7	breast:	n/a
29	chr6:26195488-26195538	GM12878	blood:	n/a
30	chr6:26195488-26195538	U87	brain:	n/a
31	chr6:26195488-26195538	HRCEpiC	kidney:	n/a
32	chr6:26195488-26195538	NT2-D1	testis:	n/a
33	chr6:26195488-26195538	GM12892	blood:	n/a
34	chr6:26195488-26195538	T-47D	breast:	n/a
35	chr6:26195488-26195538	SK-N-SH_RA	brain:	n/a
36	chr6:26195488-26195538	CMK	blood:	n/a
37	chr6:26195488-26195538	BE2_C	brain:	n/a
38	chr6:26195488-26195538	HUVEC	blood vessel:	n/a
39	chr6:26195488-26195538	Hela-S3	cervix:	n/a
40	chr6:26195488-26195538	RPTEC	kidney:	n/a
41	chr6:26195488-26195538	HCF	heart:	n/a
42	chr6:26195488-26195538	H1-hESC	embryonic stem cell:	embryo
43	chr6:26195488-26195538	HL-60	blood:	n/a
44	chr6:26195488-26195538	SKMC	muscle:	n/a
45	chr6:26195488-26195538	AG04449	skin:	fetal
46	chr6:26195488-26195538	GM06990	blood:	n/a
47	chr6:26195488-26195538	GM19239	blood:	n/a
48	chr6:26195488-26195538	HRPEpiC	eye:	n/a
49	chr6:26195488-26195538	SK-N-MC	brain:	n/a
50	chr6:26195488-26195538	HPAEpiC	pulmonary alveolar:	n/a

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr20:57466580..57468767-chr6:26193927..26196753,2	K562	blood:
2	chr13:22104602..22105122-chr6:26195424..26196111,2	HCT-116	colon:
3	chr20:52209897..52212394-chr6:26193442..26195698,2	MCF-7	breast:
4	chr6:26193858..26202011-chr6:27112529..27117825,14	K562	blood:
5	chr6:26195075..26199998-chr6:26518402..26523264,7	K562	blood:
6	chr6:26194059..26195654-chr6:27792019..27794914,2	MCF-7	breast:
7	chr6:26193666..26195814-chr6:26420014..26422966,2	K562	blood:
8	chr6:26192740..26195771-chr6:27833184..27836836,3	MCF-7	breast:
9	chr6:26193865..26195647-chr6:26428067..26430005,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-HIST1H3D-1	chr6:26194498-26196362	ncRnaDb_ncrna_FR022763_1

No data

Variant related genes	Relation type
HIST1H2BF	TF binding region
HIST1H1PS1	TF binding region
HIST1H1PS1	CpG island
HIST1H2BF	CpG island
ENSG00000230022	Chromatin interaction
ENSG00000197903	Chromatin interaction
ENSG00000124549	Chromatin interaction
ENSG00000171940	Chromatin interaction
ENSG00000184357	Chromatin interaction
ENSG00000228223	Chromatin interaction
ENSG00000265565	Chromatin interaction
ENSG00000184825	Chromatin interaction
ENSG00000199289	Chromatin interaction
ENSG00000087460	Chromatin interaction

Extended variants
information (count: 71 )
Associated
traits (count: 8 )

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10452600	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10484436	1.00[ASW][hapmap];0.89[CHB][hapmap];0.93[CHD][hapmap];0.85[LWK][hapmap];0.93[MEX][hapmap];0.80[MKK][hapmap];0.96[TSI][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11753131	1.00[ASW][hapmap];0.89[CHB][hapmap];0.93[CHD][hapmap];0.82[GIH][hapmap];0.85[LWK][hapmap];0.93[MEX][hapmap];1.00[MKK][hapmap];0.96[TSI][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11753625	0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11753655	0.89[CHB][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11753837	0.86[JPT][hapmap]
rs11754744	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11755210	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11755943	0.90[ASW][hapmap];0.93[CHD][hapmap];0.82[GIH][hapmap];0.93[MEX][hapmap];0.96[TSI][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11757394	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11757754	0.89[CHB][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11758351	0.82[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11759904	1.00[ASW][hapmap];0.89[CHB][hapmap];0.93[CHD][hapmap];0.82[GIH][hapmap];0.88[LWK][hapmap];0.93[MEX][hapmap];0.96[TSI][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs16891378	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16891397	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16891401	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16891405	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16891443	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs16891446	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs16891455	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs16891456	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs16891466	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs16891467	1.00[ASW][hapmap];0.89[CHB][hapmap];0.93[CHD][hapmap];0.82[GIH][hapmap];0.85[LWK][hapmap];0.93[MEX][hapmap];0.84[MKK][hapmap];0.96[TSI][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17598927	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1997768	0.90[ASW][hapmap];0.93[CHD][hapmap];0.82[GIH][hapmap];0.93[MEX][hapmap];0.96[TSI][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2022448	0.88[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.96[TSI][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2050948	0.89[CHB][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2050950	0.89[CHB][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2069018	0.90[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.96[TSI][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2069019	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2069020	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2143345	1.00[ASW][hapmap];0.89[CHB][hapmap];0.93[CHD][hapmap];0.82[GIH][hapmap];0.88[LWK][hapmap];0.93[MEX][hapmap];0.87[MKK][hapmap];0.96[TSI][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2143346	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2143347	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2183948	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3734530	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs3734533	0.86[CHD][hapmap]
rs3757135	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41266801	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41266807	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4496782	0.81[CHB][hapmap];0.82[CHD][hapmap]
rs55643278	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs55815656	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55848726	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56186759	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56220351	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56398712	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs67575965	0.81[ASN][1000 genomes]
rs6906367	0.81[CHB][hapmap];0.82[CHD][hapmap];0.87[GIH][hapmap]
rs7775052	0.86[JPT][hapmap]
rs9379831	0.82[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029920	chr6:25638507-26585842	Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1215 gene(s)	inside rSNPs	diseases
2	nsv538162	chr6:25638507-26585842	Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1215 gene(s)	inside rSNPs	diseases
3	nsv1030351	chr6:25813178-26352046	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1189 gene(s)	inside rSNPs	diseases
4	nsv1023453	chr6:25853830-26528250	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1201 gene(s)	inside rSNPs	diseases
5	nsv1025237	chr6:25874326-26280867	Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1166 gene(s)	inside rSNPs	diseases
6	nsv538163	chr6:25874326-26280867	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1166 gene(s)	inside rSNPs	diseases
7	nsv428137	chr6:25987413-26351920	Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1181 gene(s)	inside rSNPs	diseases
8	nsv916992	chr6:25991630-26280921	Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1159 gene(s)	inside rSNPs	diseases
9	nsv1028232	chr6:26005449-26319756	Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1171 gene(s)	inside rSNPs	diseases
10	nsv870314	chr6:26008435-26280807	Flanking Active TSS Enhancers Active TSS Genic enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1151 gene(s)	inside rSNPs	diseases
11	nsv1023457	chr6:26014014-26305407	Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1170 gene(s)	inside rSNPs	diseases
12	nsv1025493	chr6:26026870-26223838	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1001 gene(s)	inside rSNPs	diseases
13	nsv1023979	chr6:26026870-26287399	Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1113 gene(s)	inside rSNPs	diseases
14	nsv1015782	chr6:26026870-26323895	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1114 gene(s)	inside rSNPs	diseases
15	nsv1018665	chr6:26026870-26352046	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1116 gene(s)	inside rSNPs	diseases
16	nsv482348	chr6:26082709-26261136	Enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	799 gene(s)	inside rSNPs	diseases
17	nsv518431	chr6:26148311-26211368	Active TSS Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	521 gene(s)	inside rSNPs	diseases
18	nsv526456	chr6:26148311-26211368	Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	521 gene(s)	inside rSNPs	diseases
19	nsv883490	chr6:26172219-26231608	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	316 gene(s)	inside rSNPs	diseases
20	nsv1021294	chr6:26190316-26246784	Active TSS Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	309 gene(s)	inside rSNPs	diseases

mRNA abundance (count:8)

SNP	Gene	Cis/trans	Tissue	Source
rs1341759	HIST1H4F	cis	cerebellum	SCAN
rs1341759	HIST1H4F	cis	parietal	SCAN
rs1341759	HIST1H3E	cis	cerebellum	SCAN
rs1341759	HIST1H1D	cis	cerebellum	SCAN
rs1341759	HIST1H3D	cis	parietal	SCAN
rs1341759	HIST1H2AE	cis	lymphoblastoid	seeQTL
rs1341759	HIST1H3E	cis	parietal	SCAN
rs1341759	HIST1H3F	cis	cerebellum	SCAN

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:26189400-26195800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:26193600-26198400	Transcr. at gene 5' and 3'	K562	blood
3	chr6:26194200-26195800	Active TSS	Thymus	Thymus
4	chr6:26194200-26200600	Active TSS	GM12878-XiMat	blood
5	chr6:26194600-26195600	Flanking Active TSS	Dnd41	blood
6	chr6:26194600-26196400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr6:26194600-26196800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr6:26194800-26196600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
9	chr6:26194800-26197200	Flanking Active TSS	Primary B cells from cord blood	blood
10	chr6:26194800-26199800	Active TSS	Duodenum Smooth Muscle	Duodenum
11	chr6:26194800-26201000	Active TSS	HUES48 Cell Line	embryonic stem cell
12	chr6:26195000-26195600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
13	chr6:26195000-26195600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr6:26195000-26195600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
15	chr6:26195000-26195800	Active TSS	Primary T cells fromperipheralblood	blood
16	chr6:26195000-26195800	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
17	chr6:26195000-26195800	Bivalent/Poised TSS	Adipose Nuclei	Adipose
18	chr6:26195000-26195800	Active TSS	Stomach Smooth Muscle	stomach
19	chr6:26195000-26196000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr6:26195000-26196000	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr6:26195000-26196200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr6:26195000-26196400	Active TSS	NHEK	skin
23	chr6:26195000-26196600	Active TSS	Breast Myoepithelial Primary Cells	Breast
24	chr6:26195000-26196600	Active TSS	Brain Hippocampus Middle	brain
25	chr6:26195000-26197000	Active TSS	Brain Anterior Caudate	brain
26	chr6:26195000-26197200	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
27	chr6:26195000-26197800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr6:26195000-26199800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr6:26195000-26200400	Active TSS	Aorta	Aorta
30	chr6:26195000-26200400	Active TSS	Pancreatic Islets	Pancreatic Islet
31	chr6:26195000-26200600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr6:26195000-26200800	Active TSS	ES-I3 Cell Line	embryonic stem cell
33	chr6:26195000-26200800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr6:26195000-26200800	Active TSS	NHDF-Ad	bronchial
35	chr6:26195200-26195600	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
36	chr6:26195200-26195600	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
37	chr6:26195200-26195600	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
38	chr6:26195200-26195600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
39	chr6:26195200-26195600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
40	chr6:26195200-26195600	Flanking Active TSS	Fetal Lung	lung
41	chr6:26195200-26195600	Enhancers	Placenta Amnion	Placenta Amnion
42	chr6:26195200-26195600	Flanking Active TSS	HUVEC	blood vessel
43	chr6:26195200-26195600	Flanking Active TSS	NH-A	brain
44	chr6:26195200-26195600	Flanking Active TSS	Osteobl	bone
45	chr6:26195200-26195800	Active TSS	Primary B cells from peripheral blood	blood
46	chr6:26195200-26195800	Bivalent/Poised TSS	Muscle Satellite Cultured Cells	--
47	chr6:26195200-26195800	Weak transcription	Small Intestine	intestine
48	chr6:26195200-26196000	Active TSS	Cortex derived primary cultured neurospheres	brain
49	chr6:26195200-26196000	Active TSS	Liver	Liver
50	chr6:26195200-26196000	Active TSS	Fetal Intestine Large	intestine

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