Variant report

Variant	rs2143346
Chromosome Location	chr6:26198449-26198450
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:167)
CpG islands
(count:0)
Chromatin interactive
region (count:43)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:167 , 50 per page) page: 1 2 3 4

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:26198429-26200562	Raji	blood:	n/a	n/a
2	POLR2A	chr6:26198413-26200653	H1-neurons	neurons:	n/a	n/a
3	POLR2A	chr6:26198093-26200571	SK-N-SH	brain:	n/a	n/a
4	POLR2A	chr6:26193825-26201103	K562	blood:	n/a	n/a
5	CEBPD	chr6:26197958-26200955	K562	blood:	n/a	chr6:26199490-26199501
6	CREB1	chr6:26198433-26200072	HepG2	liver:	n/a	n/a
7	POLR2A	chr6:26187684-26208312	K562	blood:	n/a	n/a
8	POLR2A	chr6:26195351-26200889	H1-hESC	embryonic stem cell:	n/a	n/a
9	UBTF	chr6:26198050-26200726	K562	blood:	n/a	n/a
10	IRF1	chr6:26197350-26198510	K562	blood:	n/a	chr6:26197856-26197865 chr6:26197505-26197519 chr6:26197509-26197520
11	POLR2A	chr6:26198447-26200465	HEK293	kidney:	n/a	n/a
12	ATF2	chr6:26194955-26200949	H1-hESC	embryonic stem cell:	n/a	n/a
13	BCLAF1	chr6:26198316-26200518	GM12878	blood:	n/a	n/a
14	SIN3AK20	chr6:26198407-26200001	HCT-116	colon:	n/a	n/a
15	BCLAF1	chr6:26192611-26200894	K562	blood:	n/a	n/a
16	NFATC1	chr6:26198406-26200626	GM12878	blood:	n/a	n/a
17	POLR2A	chr6:26198228-26200565	GM18951	blood:	n/a	n/a
18	USF2	chr6:26198291-26198655	H1-hESC	embryonic stem cell:	n/a	n/a
19	POLR2A	chr6:26196587-26200011	MCF10A-Er-Src	breast:	n/a	n/a
20	POLR2A	chr6:26198003-26200608	GM12891	blood:	n/a	n/a
21	POLR2A	chr6:26198308-26200543	HCT-116	colon:	n/a	n/a
22	POLR2A	chr6:26198134-26200533	IMR90	lung:	n/a	n/a
23	TAF7	chr6:26198408-26198821	K562	blood:	n/a	n/a
24	RCOR1	chr6:26198104-26200756	Hela-S3	cervix:	n/a	n/a
25	TAF1	chr6:26198443-26198920	H1-hESC	embryonic stem cell:	n/a	n/a
26	FOXA2	chr6:26198127-26198642	HepG2	liver:	n/a	n/a
27	POLR2A	chr6:26195548-26200603	U87	brain:	n/a	n/a
28	RUNX3	chr6:26198418-26200539	GM12878	blood:	n/a	n/a
29	POLR2A	chr6:26197958-26200590	PFSK-1	brain:	n/a	n/a
30	PML	chr6:26193184-26200952	K562	blood:	n/a	n/a
31	POLR2A	chr6:26197989-26200787	Hela-S3	cervix:	n/a	n/a
32	POLR2A	chr6:26198046-26198923	HepG2	liver:	n/a	n/a
33	MTA3	chr6:26198166-26200713	GM12878	blood:	n/a	n/a
34	PML	chr6:26197818-26200639	K562	blood:	n/a	n/a
35	ZNF274	chr6:26197969-26198584	K562	blood:	n/a	n/a
36	POLR2A	chr6:26198397-26200613	GM12891	blood:	n/a	n/a
37	TAF7	chr6:26194455-26200989	H1-hESC	embryonic stem cell:	n/a	n/a
38	TEAD4	chr6:26193268-26200973	K562	blood:	n/a	n/a
39	POLR2A	chr6:26198169-26200605	ECC-1	luminal epithelium:	n/a	n/a
40	POLR2A	chr6:26198333-26200293	GM10847	blood:	n/a	n/a
41	MAFK	chr6:26198247-26198533	H1-hESC	embryonic stem cell:	n/a	n/a
42	POLR2A	chr6:26198077-26200936	K562	blood:	n/a	n/a
43	NFIC	chr6:26195431-26200718	GM12878	blood:	n/a	chr6:26195653-26195669
44	POLR2A	chr6:26198195-26200807	GM19099	blood:	n/a	n/a
45	POLR2A	chr6:26195341-26200934	HL-60	blood:	n/a	n/a
46	ARID3A	chr6:26197027-26198633	HepG2	liver:	n/a	chr6:26197718-26197734
47	MBD4	chr6:26198386-26200134	HepG2	liver:	n/a	n/a
48	POLR2A	chr6:26195326-26200683	GM12878	blood:	n/a	n/a
49	POLR2A	chr6:26197995-26200880	GM12878	blood:	n/a	n/a
50	POLR2A	chr6:26198384-26198897	H1-hESC	embryonic stem cell:	n/a	n/a

No data

(count:43 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr16:30537465..30539129-chr6:26197966..26199799,2	MCF-7	breast:
2	chr6:26197296..26200583-chr6:27100054..27103203,5	MCF-7	breast:
3	chr16:3314510..3315097-chr6:26198250..26199028,2	Hela-S3	cervix:
4	chr19:39881447..39882267-chr6:26198277..26199151,2	HCT-116	colon:
5	chr6:26044090..26046416-chr6:26198004..26201095,3	MCF-7	breast:
6	chr6:26198322..26200388-chr6:26537916..26540393,2	K562	blood:
7	chr6:26197676..26199688-chr6:27803867..27806296,2	MCF-7	breast:
8	chr6:26196435..26200575-chr6:27099094..27104350,6	MCF-7	breast:
9	chr20:47537272..47539500-chr6:26197550..26199788,2	MCF-7	breast:
10	chr3:161089431..161091438-chr6:26196434..26199354,2	MCF-7	breast:
11	chr6:26020982..26024830-chr6:26195555..26199073,5	MCF-7	breast:
12	chr1:185284885..185287425-chr6:26197449..26199086,2	MCF-7	breast:
13	chr6:26030021..26034897-chr6:26196138..26201230,10	MCF-7	breast:
14	chr6:26196890..26209578-chr6:27096615..27108451,46	K562	blood:
15	chr6:26198124..26199998-chr6:26520705..26522799,2	K562	blood:
16	chr6:26196862..26203126-chr6:27774221..27779033,8	MCF-7	breast:
17	chr19:39901043..39903228-chr6:26197435..26199053,2	K562	blood:
18	chr6:26193858..26202011-chr6:27112529..27117825,14	K562	blood:
19	chr6:26195075..26199998-chr6:26518402..26523264,7	K562	blood:
20	chr6:3157349..3159256-chr6:26198220..26201219,2	K562	blood:
21	chr6:17582130..17584573-chr6:26197697..26200325,2	MCF-7	breast:
22	chr6:26195729..26208268-chr6:27092660..27105612,50	K562	blood:
23	chr1:45185248..45187840-chr6:26198016..26200996,2	K562	blood:
24	chr6:26197661..26200522-chr9:91932409..91933987,2	MCF-7	breast:
25	chr1:11967913..11969849-chr6:26197150..26199145,2	K562	blood:
26	chr6:26197952..26199936-chr6:27859957..27865215,4	K562	blood:
27	chr6:26195849..26201222-chr6:27858647..27864324,7	K562	blood:
28	chr6:26197729..26199239-chr6:27800252..27802919,2	K562	blood:
29	chr6:26041361..26043937-chr6:26197910..26199861,2	MCF-7	breast:
30	chr17:39845714..39848067-chr6:26197980..26200504,2	MCF-7	breast:
31	chr6:26198160..26200179-chr6:33280182..33281976,2	MCF-7	breast:
32	chr6:26197678..26199478-chr6:27113722..27116433,2	MCF-7	breast:
33	chr6:26054507..26059193-chr6:26196981..26201593,9	MCF-7	breast:
34	chr1:151965176..151965807-chr6:26197923..26198879,2	Hela-S3	cervix:
35	chr6:26197637..26200453-chr6:27859195..27862304,3	MCF-7	breast:
36	chr6:26016695..26019436-chr6:26198057..26199976,2	MCF-7	breast:
37	chr1:149859325..149861103-chr6:26197923..26200886,2	MCF-7	breast:
38	chr1:117907350..117910085-chr6:26197715..26199255,2	MCF-7	breast:
39	chr6:26197916..26207803-chr6:27772547..27779655,13	K562	blood:
40	chr6:26196234..26202173-chr6:27109710..27116918,20	K562	blood:
41	chr4:119198319..119200411-chr6:26198105..26199834,2	MCF-7	breast:
42	chr6:26195787..26199567-chr6:27858679..27862629,4	MCF-7	breast:
43	chr6:26197700..26201009-chr6:27106361..27108760,3	K562	blood:

No data

Variant related genes	Relation type
HIST1H3D	TF binding region
ENSG00000217275	TF binding region
HIST1H2BF	TF binding region
ENSG00000185130	Chromatin interaction
ENSG00000271427	Chromatin interaction
ENSG00000184825	Chromatin interaction
ENSG00000197153	Chromatin interaction
ENSG00000137267	Chromatin interaction
ENSG00000196542	Chromatin interaction
ENSG00000173812	Chromatin interaction
ENSG00000217862	Chromatin interaction
ENSG00000269893	Chromatin interaction
ENSG00000184270	Chromatin interaction
ENSG00000199289	Chromatin interaction
ENSG00000228223	Chromatin interaction
ENSG00000124635	Chromatin interaction
ENSG00000197903	Chromatin interaction
ENSG00000198339	Chromatin interaction
ENSG00000124198	Chromatin interaction
ENSG00000006712	Chromatin interaction
ENSG00000196226	Chromatin interaction
ENSG00000124610	Chromatin interaction
ENSG00000198162	Chromatin interaction
ENSG00000203813	Chromatin interaction
ENSG00000196176	Chromatin interaction
ENSG00000124693	Chromatin interaction
ENSG00000187742	Chromatin interaction
ENSG00000218359	Chromatin interaction
ENSG00000137259	Chromatin interaction
ENSG00000196532	Chromatin interaction
ENSG00000063322	Chromatin interaction
ENSG00000116679	Chromatin interaction
ENSG00000182952	Chromatin interaction
ENSG00000196747	Chromatin interaction
ENSG00000196331	Chromatin interaction
ENSG00000199347	Chromatin interaction
ENSG00000184348	Chromatin interaction
ENSG00000187837	Chromatin interaction
ENSG00000233224	Chromatin interaction
ENSG00000090924	Chromatin interaction
ENSG00000178096	Chromatin interaction
ENSG00000199377	Chromatin interaction
ENSG00000273004	Chromatin interaction
ENSG00000169957	Chromatin interaction
ENSG00000234816	Chromatin interaction
ENSG00000196787	Chromatin interaction
ENSG00000231925	Chromatin interaction
ENSG00000265565	Chromatin interaction

Extended variants
information (count: 71 )
Associated
traits (count: 10 )

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10452600	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10484436	1.00[ASW][hapmap];0.89[CHB][hapmap];0.93[CHD][hapmap];0.85[LWK][hapmap];0.93[MEX][hapmap];0.80[MKK][hapmap];0.96[TSI][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11753131	1.00[ASW][hapmap];0.89[CHB][hapmap];0.93[CHD][hapmap];0.82[GIH][hapmap];0.85[LWK][hapmap];0.93[MEX][hapmap];1.00[MKK][hapmap];0.96[TSI][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11753625	0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11753655	0.89[CHB][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11753837	0.86[JPT][hapmap]
rs11754744	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11755210	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11755943	0.90[ASW][hapmap];0.93[CHD][hapmap];0.82[GIH][hapmap];0.93[MEX][hapmap];0.96[TSI][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11757394	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11757754	0.89[CHB][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11758351	0.82[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11759904	1.00[ASW][hapmap];0.89[CHB][hapmap];0.93[CHD][hapmap];0.82[GIH][hapmap];0.88[LWK][hapmap];0.93[MEX][hapmap];0.96[TSI][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1341759	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16891378	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16891397	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16891401	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16891405	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16891443	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs16891446	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs16891455	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs16891456	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs16891466	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs16891467	1.00[ASW][hapmap];0.89[CHB][hapmap];0.93[CHD][hapmap];0.82[GIH][hapmap];0.85[LWK][hapmap];0.93[MEX][hapmap];0.84[MKK][hapmap];0.96[TSI][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17598927	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1997768	0.90[ASW][hapmap];0.93[CHD][hapmap];0.82[GIH][hapmap];0.93[MEX][hapmap];0.96[TSI][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2022448	0.88[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.96[TSI][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2050948	0.89[CHB][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2050950	0.89[CHB][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2069018	0.90[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.96[TSI][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2069019	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2069020	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2143345	1.00[ASW][hapmap];0.89[CHB][hapmap];0.93[CHD][hapmap];0.82[GIH][hapmap];0.88[LWK][hapmap];0.93[MEX][hapmap];0.87[MKK][hapmap];0.96[TSI][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2143347	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2183948	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3734530	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs3734533	0.86[CHD][hapmap]
rs3757135	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41266801	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41266807	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4496782	0.81[CHB][hapmap];0.82[CHD][hapmap]
rs55643278	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs55815656	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55848726	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56186759	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56220351	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56398712	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs67575965	0.81[ASN][1000 genomes]
rs6906367	0.81[CHB][hapmap];0.82[CHD][hapmap];0.87[GIH][hapmap]
rs7775052	0.86[JPT][hapmap]
rs9379831	0.82[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029920	chr6:25638507-26585842	Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1215 gene(s)	inside rSNPs	diseases
2	nsv538162	chr6:25638507-26585842	Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1215 gene(s)	inside rSNPs	diseases
3	nsv1030351	chr6:25813178-26352046	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1189 gene(s)	inside rSNPs	diseases
4	nsv1023453	chr6:25853830-26528250	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1201 gene(s)	inside rSNPs	diseases
5	nsv1025237	chr6:25874326-26280867	Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1166 gene(s)	inside rSNPs	diseases
6	nsv538163	chr6:25874326-26280867	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1166 gene(s)	inside rSNPs	diseases
7	nsv428137	chr6:25987413-26351920	Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1181 gene(s)	inside rSNPs	diseases
8	nsv916992	chr6:25991630-26280921	Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1159 gene(s)	inside rSNPs	diseases
9	nsv1028232	chr6:26005449-26319756	Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1171 gene(s)	inside rSNPs	diseases
10	nsv870314	chr6:26008435-26280807	Flanking Active TSS Enhancers Active TSS Genic enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1151 gene(s)	inside rSNPs	diseases
11	nsv1023457	chr6:26014014-26305407	Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1170 gene(s)	inside rSNPs	diseases
12	nsv1025493	chr6:26026870-26223838	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1001 gene(s)	inside rSNPs	diseases
13	nsv1023979	chr6:26026870-26287399	Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1113 gene(s)	inside rSNPs	diseases
14	nsv1015782	chr6:26026870-26323895	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1114 gene(s)	inside rSNPs	diseases
15	nsv1018665	chr6:26026870-26352046	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1116 gene(s)	inside rSNPs	diseases
16	nsv482348	chr6:26082709-26261136	Enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	799 gene(s)	inside rSNPs	diseases
17	nsv518431	chr6:26148311-26211368	Active TSS Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	521 gene(s)	inside rSNPs	diseases
18	nsv526456	chr6:26148311-26211368	Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	521 gene(s)	inside rSNPs	diseases
19	nsv883490	chr6:26172219-26231608	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	316 gene(s)	inside rSNPs	diseases
20	nsv1021294	chr6:26190316-26246784	Active TSS Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	309 gene(s)	inside rSNPs	diseases

mRNA abundance (count:10)

SNP	Gene	Cis/trans	Tissue	Source
rs2143346	HIST1H2AE	cis	lymphoblastoid	seeQTL
rs2143346	HIST1H3E	cis	parietal	SCAN
rs2143346	HIST1H3D	cis	parietal	SCAN
rs2143346	HIST1H1D	cis	cerebellum	SCAN
rs2143346	HIST1H3E	cis	cerebellum	SCAN
rs2143346	HIST1H2AE	cis	multi-tissue	Pritchard
rs2143346	HIST1H4F	cis	parietal	SCAN
rs2143346	HIST1H2BG	cis	multi-tissue	Pritchard
rs2143346	HIST1H3F	cis	cerebellum	SCAN
rs2143346	HIST1H4F	cis	cerebellum	SCAN

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:26194200-26200600	Active TSS	GM12878-XiMat	blood
2	chr6:26194800-26199800	Active TSS	Duodenum Smooth Muscle	Duodenum
3	chr6:26194800-26201000	Active TSS	HUES48 Cell Line	embryonic stem cell
4	chr6:26195000-26199800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr6:26195000-26200400	Active TSS	Aorta	Aorta
6	chr6:26195000-26200400	Active TSS	Pancreatic Islets	Pancreatic Islet
7	chr6:26195000-26200600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr6:26195000-26200800	Active TSS	ES-I3 Cell Line	embryonic stem cell
9	chr6:26195000-26200800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr6:26195000-26200800	Active TSS	NHDF-Ad	bronchial
11	chr6:26195200-26200000	Active TSS	Primary T helper naive cells fromperipheralblood	blood
12	chr6:26195200-26200000	Active TSS	Primary T killer naive cells fromperipheralblood	blood
13	chr6:26195200-26200000	Active TSS	NHLF	lung
14	chr6:26195200-26200600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr6:26195200-26200600	Active TSS	Brain Angular Gyrus	brain
16	chr6:26195200-26200800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
17	chr6:26195200-26201000	Active TSS	HUES6 Cell Line	embryonic stem cell
18	chr6:26195200-26201400	Active TSS	H1 Cell Line	embryonic stem cell
19	chr6:26195400-26199000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
20	chr6:26195400-26199800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr6:26195400-26199800	Active TSS	Primary T helper naive cells from peripheral blood	blood
22	chr6:26195400-26199800	Active TSS	Fetal Kidney	kidney
23	chr6:26195400-26200000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr6:26195400-26200600	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr6:26195400-26200800	Active TSS	H9 Cell Line	embryonic stem cell
26	chr6:26195400-26200800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr6:26195400-26200800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr6:26195400-26200800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr6:26195400-26200800	Active TSS	Hela-S3	cervix
30	chr6:26195600-26200600	Active TSS	HUES64 Cell Line	embryonic stem cell
31	chr6:26195600-26200800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr6:26195600-26201000	Active TSS	iPS-15b Cell Line	embryonic stem cell
33	chr6:26195600-26201600	Active TSS	iPS-20b Cell Line	embryonic stem cell
34	chr6:26195800-26200600	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr6:26196000-26201400	Active TSS	iPS-18 Cell Line	embryonic stem cell
36	chr6:26196200-26200400	Active TSS	HSMMtube	muscle
37	chr6:26196400-26199800	Active TSS	NH-A	brain
38	chr6:26196600-26199800	Active TSS	Primary hematopoietic stem cells short term culture	blood
39	chr6:26196600-26199800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr6:26196800-26199800	Active TSS	NHEK	skin
41	chr6:26196800-26200000	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr6:26196800-26200000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr6:26196800-26200200	Active TSS	Fetal Intestine Large	intestine
44	chr6:26196800-26200800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
45	chr6:26197000-26199800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr6:26197000-26200000	Active TSS	Brain Hippocampus Middle	brain
47	chr6:26197000-26200200	Active TSS	Primary T killer memory cells from peripheral blood	blood
48	chr6:26197000-26200200	Active TSS	Brain Germinal Matrix	brain
49	chr6:26197000-26200200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
50	chr6:26197000-26200400	Active TSS	Colon Smooth Muscle	Colon

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