Variant report

Variant	rs41266801
Chromosome Location	chr6:26197493-26197494
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:387)
CpG islands
(count:61)
Chromatin interactive
region (count:27)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:387 , 50 per page) page: 1 2 3 4 5 6 7 8

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ETS1	chr6:26196962-26197730	K562	blood:	n/a	n/a
2	POLR2A	chr6:26195405-26197856	GM12891	blood:	n/a	n/a
3	POLR2A	chr6:26195569-26197730	GM19099	blood:	n/a	n/a
4	GTF2F1	chr6:26197306-26197874	H1-hESC	embryonic stem cell:	n/a	n/a
5	NFYB	chr6:26197242-26197942	GM12878	blood:	n/a	chr6:26197559-26197574 chr6:26197853-26197867 chr6:26197852-26197867 chr6:26197852-26197867 chr6:26197856-26197868 chr6:26197855-26197865 chr6:26197557-26197572 chr6:26197558-26197572 chr6:26197557-26197572 chr6:26197591-26197606
6	POLR2A	chr6:26193825-26201103	K562	blood:	n/a	n/a
7	ZBTB33	chr6:26196983-26197646	GM12878	blood:	n/a	n/a
8	MXI1	chr6:26197002-26197882	HepG2	liver:	n/a	n/a
9	ZKSCAN1	chr6:26197115-26197839	Hela-S3	cervix:	n/a	n/a
10	BCLAF1	chr6:26196446-26197944	GM12878	blood:	n/a	n/a
11	EP300	chr6:26197280-26197588	K562	blood:	n/a	n/a
12	EBF1	chr6:26197351-26197665	GM12878	blood:	n/a	n/a
13	CEBPB	chr6:26197257-26197704	Hela-S3	cervix:	n/a	n/a
14	POLR2A	chr6:26187684-26208312	K562	blood:	n/a	n/a
15	RELA	chr6:26196586-26197686	GM15510	blood:	n/a	n/a
16	TAF1	chr6:26197127-26197654	PFSK-1	brain:	n/a	n/a
17	RCOR1	chr6:26197038-26197739	K562	blood:	n/a	n/a
18	POLR2A	chr6:26195351-26200889	H1-hESC	embryonic stem cell:	n/a	n/a
19	NFYA	chr6:26197321-26197943	K562	blood:	n/a	chr6:26197853-26197867 chr6:26197852-26197867 chr6:26197852-26197867 chr6:26197856-26197868 chr6:26197855-26197865 chr6:26197557-26197572 chr6:26197558-26197572 chr6:26197557-26197572 chr6:26197553-26197571
20	POLR2A	chr6:26195529-26197821	HepG2	liver:	n/a	n/a
21	YY1	chr6:26197335-26197835	GM12892	blood:	n/a	chr6:26197706-26197715
22	RELA	chr6:26197035-26197784	GM19099	blood:	n/a	n/a
23	IRF1	chr6:26197350-26198510	K562	blood:	n/a	chr6:26197856-26197865 chr6:26197505-26197519 chr6:26197509-26197520
24	EGR1	chr6:26197318-26197756	K562	blood:	n/a	chr6:26197605-26197616 chr6:26197603-26197618
25	ATF2	chr6:26194955-26200949	H1-hESC	embryonic stem cell:	n/a	n/a
26	REST	chr6:26196961-26197692	HepG2	liver:	n/a	n/a
27	ZNF143	chr6:26197325-26197758	GM12878	blood:	n/a	n/a
28	BCLAF1	chr6:26192611-26200894	K562	blood:	n/a	n/a
29	POLR2A	chr6:26195442-26197906	Hela-S3	cervix:	n/a	n/a
30	ELF1	chr6:26197008-26197506	GM12878	blood:	n/a	n/a
31	POLR2A	chr6:26195420-26197887	GM12892	blood:	n/a	n/a
32	POLR2A	chr6:26196491-26197742	HepG2	liver:	n/a	n/a
33	TAF1	chr6:26197012-26197699	GM12891	blood:	n/a	n/a
34	REST	chr6:26197044-26197701	SK-N-SH	brain:	n/a	n/a
35	MAFK	chr6:26197172-26197841	IMR90	lung:	n/a	n/a
36	E2F4	chr6:26197338-26198033	GM12878	blood:	n/a	chr6:26197856-26197865
37	TBL1XR1	chr6:26197248-26198437	K562	blood:	n/a	n/a
38	POLR2A	chr6:26196725-26197840	IMR90	lung:	n/a	n/a
39	RELA	chr6:26196919-26197594	GM19193	blood:	n/a	n/a
40	SIN3AK20	chr6:26197073-26197900	HepG2	liver:	n/a	n/a
41	TAF1	chr6:26196944-26197742	K562	blood:	n/a	n/a
42	POLR2A	chr6:26196587-26200011	MCF10A-Er-Src	breast:	n/a	n/a
43	SIN3AK20	chr6:26196863-26197918	HCT-116	colon:	n/a	n/a
44	JUND	chr6:26196975-26197567	H1-hESC	embryonic stem cell:	n/a	n/a
45	ZBTB33	chr6:26196947-26197614	GM12878	blood:	n/a	n/a
46	YY1	chr6:26196700-26197723	K562	blood:	n/a	chr6:26197706-26197715
47	MAX	chr6:26197042-26197742	NB4	blood:	n/a	n/a
48	TAF1	chr6:26197045-26197691	GM12891	blood:	n/a	n/a
49	POLR2A	chr6:26196484-26197846	HepG2	liver:	n/a	n/a
50	PAX5	chr6:26197303-26197588	GM12878	blood:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:26197481-26197531	CMK	blood:	n/a
2	chr6:26197481-26197531	HMEC	breast:	n/a
3	chr6:26197481-26197531	GM12891	blood:	n/a
4	chr6:26197481-26197531	HEEpiC	esophagus:	n/a
5	chr6:26197481-26197531	HPAEpiC	pulmonary alveolar:	n/a
6	chr6:26197481-26197531	RPTEC	kidney:	n/a
7	chr6:26197481-26197531	H1-hESC	embryonic stem cell:	embryo
8	chr6:26197481-26197531	PFSK-1	brain:	n/a
9	chr6:26197481-26197531	K562	blood:	n/a
10	chr6:26197481-26197531	PrEC	prostate:	n/a
11	chr6:26197481-26197531	HRE	kidney:	n/a
12	chr6:26197481-26197531	HCT-116	colon:	n/a
13	chr6:26197481-26197531	BE2_C	brain:	n/a
14	chr6:26197481-26197531	GM19239	blood:	n/a
15	chr6:26197481-26197531	PANC-1	pancreas:	n/a
16	chr6:26197481-26197531	NB4	blood:	n/a
17	chr6:26197481-26197531	HIPEpiC	eye:	n/a
18	chr6:26197481-26197531	U87	brain:	n/a
19	chr6:26197481-26197531	SK-N-MC	brain:	n/a
20	chr6:26197481-26197531	AoSMC	blood vessel:	n/a
21	chr6:26197481-26197531	Hepatocyte	liver:	n/a
22	chr6:26197481-26197531	IMR90	lung:	fetal
23	chr6:26197481-26197531	HNPCEpiC	eye:	n/a
24	chr6:26197481-26197531	NHBE	bronchial:	n/a
25	chr6:26197481-26197531	HCM	heart:	n/a
26	chr6:26197481-26197531	HCF	heart:	n/a
27	chr6:26197481-26197531	AG09309	skin:	n/a
28	chr6:26197481-26197531	HepG2	liver:	n/a
29	chr6:26197481-26197531	ECC-1	luminal epithelium:	n/a
30	chr6:26197481-26197531	HEK293	kidney:	embryo
31	chr6:26197481-26197531	HAEpiC	amniotic membrane:	n/a
32	chr6:26197481-26197531	HL-60	blood:	n/a
33	chr6:26197481-26197531	A549	lung:	n/a
34	chr6:26197481-26197531	NH-A	brain:	n/a
35	chr6:26197481-26197531	AG04449	skin:	fetal
36	chr6:26197481-26197531	Caco-2	colon:	n/a
37	chr6:26197481-26197531	MCF-7	breast:	n/a
38	chr6:26197481-26197531	AG04450	lung:	fetal
39	chr6:26197481-26197531	HRPEpiC	eye:	n/a
40	chr6:26197481-26197531	LNCaP	prostate:	n/a
41	chr6:26197481-26197531	NHDF-neo	bronchial:	n/a
42	chr6:26197481-26197531	SKMC	muscle:	n/a
43	chr6:26197481-26197531	MCF10A-Er-Src	breast:	n/a
44	chr6:26197481-26197531	HRCEpiC	kidney:	n/a
45	chr6:26197481-26197531	Jurkat	blood:	n/a
46	chr6:26197481-26197531	ovcar-3	ovarian:	n/a
47	chr6:26197481-26197531	AG09319	gingival:	n/a
48	chr6:26197481-26197531	SAEC	small airway:	n/a
49	chr6:26197481-26197531	BJ	skin:	n/a
50	chr6:26197481-26197531	GM12892	blood:	n/a

(count:27 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:26197296..26200583-chr6:27100054..27103203,5	MCF-7	breast:
2	chr6:26156537..26157107-chr6:26197101..26197631,2	Hela-S3	cervix:
3	chr6:26197023..26197643-chr6:32939598..32940565,2	Hela-S3	cervix:
4	chr11:65837683..65838307-chr6:26196783..26197662,2	Hela-S3	cervix:
5	chr20:42086222..42086990-chr6:26197067..26197853,2	Hela-S3	cervix:
6	chr6:26196435..26200575-chr6:27099094..27104350,6	MCF-7	breast:
7	chr3:161089431..161091438-chr6:26196434..26199354,2	MCF-7	breast:
8	chr6:26020982..26024830-chr6:26195555..26199073,5	MCF-7	breast:
9	chr1:185284885..185287425-chr6:26197449..26199086,2	MCF-7	breast:
10	chr6:26030021..26034897-chr6:26196138..26201230,10	MCF-7	breast:
11	chr6:26197405..26198361-chr6:119215222..119215745,2	Hela-S3	cervix:
12	chr6:26196890..26209578-chr6:27096615..27108451,46	K562	blood:
13	chr6:26196862..26203126-chr6:27774221..27779033,8	MCF-7	breast:
14	chr6:26196016..26198386-chr6:26419404..26421954,3	K562	blood:
15	chr19:39901043..39903228-chr6:26197435..26199053,2	K562	blood:
16	chr6:26193858..26202011-chr6:27112529..27117825,14	K562	blood:
17	chr6:26195075..26199998-chr6:26518402..26523264,7	K562	blood:
18	chr6:26195729..26208268-chr6:27092660..27105612,50	K562	blood:
19	chr6:26197050..26197886-chr6:26271259..26271822,2	Hela-S3	cervix:
20	chr1:11967913..11969849-chr6:26197150..26199145,2	K562	blood:
21	chr6:26196799..26197741-chr6:27114820..27115601,2	Hela-S3	cervix:
22	chr6:26195849..26201222-chr6:27858647..27864324,7	K562	blood:
23	chr6:26032134..26032741-chr6:26197117..26197938,2	Hela-S3	cervix:
24	chr6:26054507..26059193-chr6:26196981..26201593,9	MCF-7	breast:
25	chr6:26158311..26158901-chr6:26196952..26197652,2	HCT-116	colon:
26	chr6:26196234..26202173-chr6:27109710..27116918,20	K562	blood:
27	chr6:26195787..26199567-chr6:27858679..27862629,4	MCF-7	breast:

No data

Variant related genes	Relation type
HIST1H3D	TF binding region
HIST1H2BF	TF binding region
ENSG00000217275	TF binding region
HIST1H2BF	CpG island
ENSG00000217275	CpG island
HIST1H3D	CpG island
ENSG00000111875	Chromatin interaction
ENSG00000124635	Chromatin interaction
ENSG00000158373	Chromatin interaction
ENSG00000196176	Chromatin interaction
ENSG00000217862	Chromatin interaction
ENSG00000196331	Chromatin interaction
ENSG00000196542	Chromatin interaction
ENSG00000187837	Chromatin interaction
ENSG00000196747	Chromatin interaction
ENSG00000197153	Chromatin interaction
ENSG00000233224	Chromatin interaction
ENSG00000137259	Chromatin interaction
ENSG00000273004	Chromatin interaction
ENSG00000196787	Chromatin interaction
ENSG00000256018	Chromatin interaction
ENSG00000168298	Chromatin interaction
ENSG00000124193	Chromatin interaction
ENSG00000124693	Chromatin interaction
ENSG00000184825	Chromatin interaction
ENSG00000228223	Chromatin interaction
ENSG00000199347	Chromatin interaction
ENSG00000090924	Chromatin interaction
ENSG00000198339	Chromatin interaction
ENSG00000204256	Chromatin interaction
ENSG00000175115	Chromatin interaction
ENSG00000116679	Chromatin interaction
ENSG00000124549	Chromatin interaction
ENSG00000111877	Chromatin interaction
ENSG00000185130	Chromatin interaction
ENSG00000197903	Chromatin interaction
ENSG00000265565	Chromatin interaction
ENSG00000199289	Chromatin interaction
ENSG00000203813	Chromatin interaction

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10452600	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10484436	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11753131	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11753625	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11753655	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11754744	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11755210	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11755943	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11757394	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11757754	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11758351	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11759904	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1341759	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16891378	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16891397	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16891401	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16891405	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16891443	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16891446	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16891455	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16891456	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16891466	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16891467	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17598927	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1997768	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2022448	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2050948	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2050950	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2069018	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2069019	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2069020	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2143345	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2143346	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2143347	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2183948	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3757135	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41266807	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55643278	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs55815656	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55848726	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56186759	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56220351	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56398712	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs67575965	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029920	chr6:25638507-26585842	Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1215 gene(s)	inside rSNPs	diseases
2	nsv538162	chr6:25638507-26585842	Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1215 gene(s)	inside rSNPs	diseases
3	nsv1030351	chr6:25813178-26352046	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1189 gene(s)	inside rSNPs	diseases
4	nsv1023453	chr6:25853830-26528250	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1201 gene(s)	inside rSNPs	diseases
5	nsv1025237	chr6:25874326-26280867	Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1166 gene(s)	inside rSNPs	diseases
6	nsv538163	chr6:25874326-26280867	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1166 gene(s)	inside rSNPs	diseases
7	nsv428137	chr6:25987413-26351920	Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1181 gene(s)	inside rSNPs	diseases
8	nsv916992	chr6:25991630-26280921	Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1159 gene(s)	inside rSNPs	diseases
9	nsv1028232	chr6:26005449-26319756	Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1171 gene(s)	inside rSNPs	diseases
10	nsv870314	chr6:26008435-26280807	Flanking Active TSS Enhancers Active TSS Genic enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1151 gene(s)	inside rSNPs	diseases
11	nsv1023457	chr6:26014014-26305407	Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1170 gene(s)	inside rSNPs	diseases
12	nsv1025493	chr6:26026870-26223838	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1001 gene(s)	inside rSNPs	diseases
13	nsv1023979	chr6:26026870-26287399	Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1113 gene(s)	inside rSNPs	diseases
14	nsv1015782	chr6:26026870-26323895	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1114 gene(s)	inside rSNPs	diseases
15	nsv1018665	chr6:26026870-26352046	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1116 gene(s)	inside rSNPs	diseases
16	nsv482348	chr6:26082709-26261136	Enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	799 gene(s)	inside rSNPs	diseases
17	nsv518431	chr6:26148311-26211368	Active TSS Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	521 gene(s)	inside rSNPs	diseases
18	nsv526456	chr6:26148311-26211368	Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	521 gene(s)	inside rSNPs	diseases
19	nsv883490	chr6:26172219-26231608	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	316 gene(s)	inside rSNPs	diseases
20	nsv1021294	chr6:26190316-26246784	Active TSS Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	309 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:26193600-26198400	Transcr. at gene 5' and 3'	K562	blood
2	chr6:26194200-26200600	Active TSS	GM12878-XiMat	blood
3	chr6:26194800-26199800	Active TSS	Duodenum Smooth Muscle	Duodenum
4	chr6:26194800-26201000	Active TSS	HUES48 Cell Line	embryonic stem cell
5	chr6:26195000-26197800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr6:26195000-26199800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr6:26195000-26200400	Active TSS	Aorta	Aorta
8	chr6:26195000-26200400	Active TSS	Pancreatic Islets	Pancreatic Islet
9	chr6:26195000-26200600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr6:26195000-26200800	Active TSS	ES-I3 Cell Line	embryonic stem cell
11	chr6:26195000-26200800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr6:26195000-26200800	Active TSS	NHDF-Ad	bronchial
13	chr6:26195200-26197600	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
14	chr6:26195200-26197600	Active TSS	Ovary	ovary
15	chr6:26195200-26200000	Active TSS	Primary T helper naive cells fromperipheralblood	blood
16	chr6:26195200-26200000	Active TSS	Primary T killer naive cells fromperipheralblood	blood
17	chr6:26195200-26200000	Active TSS	NHLF	lung
18	chr6:26195200-26200600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr6:26195200-26200600	Active TSS	Brain Angular Gyrus	brain
20	chr6:26195200-26200800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
21	chr6:26195200-26201000	Active TSS	HUES6 Cell Line	embryonic stem cell
22	chr6:26195200-26201400	Active TSS	H1 Cell Line	embryonic stem cell
23	chr6:26195400-26197800	Bivalent/Poised TSS	Psoas Muscle	Psoas
24	chr6:26195400-26198000	Active TSS	Primary T cells from cord blood	blood
25	chr6:26195400-26199000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
26	chr6:26195400-26199800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr6:26195400-26199800	Active TSS	Primary T helper naive cells from peripheral blood	blood
28	chr6:26195400-26199800	Active TSS	Fetal Kidney	kidney
29	chr6:26195400-26200000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr6:26195400-26200600	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr6:26195400-26200800	Active TSS	H9 Cell Line	embryonic stem cell
32	chr6:26195400-26200800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr6:26195400-26200800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr6:26195400-26200800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr6:26195400-26200800	Active TSS	Hela-S3	cervix
36	chr6:26195600-26200600	Active TSS	HUES64 Cell Line	embryonic stem cell
37	chr6:26195600-26200800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
38	chr6:26195600-26201000	Active TSS	iPS-15b Cell Line	embryonic stem cell
39	chr6:26195600-26201600	Active TSS	iPS-20b Cell Line	embryonic stem cell
40	chr6:26195800-26197600	Active TSS	Esophagus	oesophagus
41	chr6:26195800-26197600	Active TSS	Small Intestine	intestine
42	chr6:26195800-26197600	Transcr. at gene 5' and 3'	Thymus	Thymus
43	chr6:26195800-26200600	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr6:26196000-26197600	Flanking Active TSS	Fetal Muscle Leg	muscle
45	chr6:26196000-26197800	Flanking Active TSS	Liver	Liver
46	chr6:26196000-26201400	Active TSS	iPS-18 Cell Line	embryonic stem cell
47	chr6:26196200-26200400	Active TSS	HSMMtube	muscle
48	chr6:26196400-26197600	Bivalent/Poised TSS	Muscle Satellite Cultured Cells	--
49	chr6:26196400-26199800	Active TSS	NH-A	brain
50	chr6:26196600-26197600	Transcr. at gene 5' and 3'	Right Atrium	heart

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