Variant report

Variant	rs1997768
Chromosome Location	chr6:26217728-26217729
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:278)
CpG islands
(count:0)
Chromatin interactive
region (count:55)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:278 , 50 per page) page: 1 2 3 4 5 6

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RCOR1	chr6:26216523-26217753	GM12878	blood:	n/a	n/a
2	POLR2A	chr6:26215735-26217935	Raji	blood:	n/a	n/a
3	SIN3AK20	chr6:26215578-26217797	SK-N-SH	brain:	n/a	n/a
4	POLR2A	chr6:26214574-26218621	GM12878	blood:	n/a	n/a
5	ARID3A	chr6:26216682-26217944	HepG2	liver:	n/a	n/a
6	MXI1	chr6:26214680-26218422	K562	blood:	n/a	n/a
7	POLR2A	chr6:26215213-26218610	GM12878	blood:	n/a	n/a
8	NFIC	chr6:26215794-26217960	HepG2	liver:	n/a	n/a
9	MBD4	chr6:26215749-26218130	HepG2	liver:	n/a	n/a
10	BACH1	chr6:26215565-26218191	K562	blood:	n/a	n/a
11	GATA3	chr6:26215520-26218108	SK-N-SH	brain:	n/a	chr6:26215798-26215807 chr6:26215794-26215810 chr6:26217036-26217046
12	KAP1	chr6:26215852-26218055	K562	blood:	n/a	n/a
13	PML	chr6:26215528-26218235	GM12878	blood:	n/a	n/a
14	TAF1	chr6:26216458-26217764	H1-hESC	embryonic stem cell:	n/a	n/a
15	ELK1	chr6:26215673-26218149	K562	blood:	n/a	n/a
16	POLR2A	chr6:26215807-26217978	HL-60	blood:	n/a	n/a
17	CREB1	chr6:26214528-26218298	K562	blood:	n/a	n/a
18	POLR2A	chr6:26215369-26218389	Hela-S3	cervix:	n/a	n/a
19	POLR2A	chr6:26215050-26218139	ProgFib	skin:	n/a	n/a
20	POLR2A	chr6:26213900-26218742	K562	blood:	n/a	n/a
21	EGR1	chr6:26217043-26218215	K562	blood:	n/a	chr6:26217297-26217311
22	SIN3AK20	chr6:26214907-26218436	MCF-7	breast:	n/a	n/a
23	REST	chr6:26215385-26218336	H1-neurons	neurons:	n/a	n/a
24	BCLAF1	chr6:26213034-26218725	K562	blood:	n/a	chr6:26213177-26213185
25	POLR2A	chr6:26215583-26218221	GM18951	blood:	n/a	n/a
26	HEY1	chr6:26215453-26218257	HepG2	liver:	n/a	n/a
27	YY1	chr6:26217058-26217776	GM12878	blood:	n/a	n/a
28	CREB1	chr6:26216529-26217806	H1-hESC	embryonic stem cell:	n/a	n/a
29	STAT5A	chr6:26216030-26217854	K562	blood:	n/a	n/a
30	POLR2A	chr6:26215014-26218326	Hela-S3	cervix:	n/a	n/a
31	REST	chr6:26216604-26217775	H1-neurons	neurons:	n/a	n/a
32	PML	chr6:26215622-26217759	MCF-7	breast:	n/a	n/a
33	POLR2A	chr6:26215399-26218324	GM12891	blood:	n/a	n/a
34	POLR2A	chr6:26215743-26217728	Gliobla	brain:	n/a	n/a
35	CREB1	chr6:26215610-26217830	H1-hESC	embryonic stem cell:	n/a	n/a
36	JUND	chr6:26216608-26218080	H1-hESC	embryonic stem cell:	n/a	chr6:26217036-26217045 chr6:26217984-26217996
37	TEAD4	chr6:26216317-26218188	K562	blood:	n/a	n/a
38	POLR2A	chr6:26215066-26217784	MCF-7	breast:	n/a	n/a
39	RAD21	chr6:26216637-26217756	Hela-S3	cervix:	n/a	n/a
40	SP4	chr6:26215538-26218294	H1-hESC	embryonic stem cell:	n/a	n/a
41	POLR2A	chr6:26215415-26218327	GM12878	blood:	n/a	n/a
42	POLR2A	chr6:26215609-26218176	HepG2	liver:	n/a	n/a
43	CHD1	chr6:26215397-26218588	H1-hESC	embryonic stem cell:	n/a	chr6:26217091-26217098
44	POLR2A	chr6:26213353-26218625	H1-hESC	embryonic stem cell:	n/a	n/a
45	POLR2A	chr6:26213023-26219134	K562	blood:	n/a	n/a
46	CEBPD	chr6:26213028-26218710	K562	blood:	n/a	n/a
47	IRF1	chr6:26216592-26217894	K562	blood:	n/a	chr6:26217850-26217864 chr6:26217852-26217866 chr6:26217851-26217865 chr6:26217077-26217086
48	TEAD4	chr6:26213069-26218824	K562	blood:	n/a	n/a
49	KAT2A	chr6:26215771-26218072	GM12878	blood:	n/a	n/a
50	ZNF143	chr6:26215687-26218047	K562	blood:	n/a	n/a

No data

(count:55 , 50 per page) page: 1 2

No.	Distal block	Cell Line	Cell type
1	chr6:26204924..26205499-chr6:26217477..26218348,2	MCF-7	breast:
2	chr1:185286851..185288619-chr6:26215919..26218798,2	MCF-7	breast:
3	chr6:26215814..26218576-chr6:27831262..27835058,4	K562	blood:
4	chr6:26043570..26047536-chr6:26215421..26218540,6	MCF-7	breast:
5	chr5:90678709..90679330-chr6:26217134..26217918,3	Hela-S3	cervix:
6	chr14:75745082..75745635-chr6:26217271..26218174,2	Hela-S3	cervix:
7	chr6:26213328..26219374-chr6:27098401..27104203,12	MCF-7	breast:
8	chr6:26214207..26218801-chr6:27106442..27111603,7	MCF-7	breast:
9	chr6:26214930..26218738-chr6:27859344..27862505,4	MCF-7	breast:
10	chr6:26217292..26219458-chr9:33818119..33819902,2	MCF-7	breast:
11	chr17:59486965..59489416-chr6:26217017..26218582,2	MCF-7	breast:
12	chr6:26215032..26220721-chr6:27098305..27106549,21	K562	blood:
13	chr6:26216471..26218036-chr7:5566391..5569236,2	K562	blood:
14	chr6:26215488..26220486-chr6:27788576..27794997,7	K562	blood:
15	chr5:54602447..54604232-chr6:26215891..26218402,2	MCF-7	breast:
16	chr19:2268615..2270714-chr6:26215823..26217976,2	MCF-7	breast:
17	chr20:45983626..45990227-chr6:26215663..26218727,7	MCF-7	breast:
18	chr6:26212513..26218940-chr6:27112008..27117016,14	K562	blood:
19	chr6:26217613..26218436-chr8:80942176..80942749,2	Hela-S3	cervix:
20	chr6:26215412..26219085-chr6:26518224..26524021,6	K562	blood:
21	chr6:26215418..26221672-chr6:27112268..27118117,18	K562	blood:
22	chr19:39897103..39897992-chr6:26216899..26217756,2	Hela-S3	cervix:
23	chr6:26020264..26023736-chr6:26216792..26220704,4	MCF-7	breast:
24	chr6:26217037..26219945-chr6:26536626..26539021,2	K562	blood:
25	chr1:149857452..149859186-chr6:26215431..26217999,2	MCF-7	breast:
26	chr5:108083910..108084452-chr6:26217286..26218010,2	Hela-S3	cervix:
27	chr11:62647607..62649189-chr6:26216943..26218786,2	MCF-7	breast:
28	chr6:26216777..26217754-chr7:99933218..99933721,2	Hela-S3	cervix:
29	chr6:26210558..26220469-chr6:27093552..27103796,28	K562	blood:
30	chr6:26215236..26220335-chr6:27112505..27117796,8	MCF-7	breast:
31	chr16:88870201..88873123-chr6:26216072..26218650,2	MCF-7	breast:
32	chr11:2949908..2952433-chr6:26215728..26218392,2	K562	blood:
33	chr6:26215362..26217924-chr6:27790762..27793250,4	MCF-7	breast:
34	chr4:153457539..153458511-chr6:26216981..26217788,2	Hela-S3	cervix:
35	chr11:65625083..65627509-chr6:26216326..26218082,2	MCF-7	breast:
36	chr1:178994037..178996559-chr6:26216842..26218993,2	MCF-7	breast:
37	chr6:26217460..26219283-chr6:27861306..27863476,2	MCF-7	breast:
38	chr16:775552..777851-chr6:26216685..26219399,2	MCF-7	breast:
39	chr6:26214556..26218152-chr6:27805510..27808232,3	K562	blood:
40	chr1:28973220..28975380-chr6:26215737..26218406,2	K562	blood:
41	chr6:26212467..26219073-chr6:27112587..27119625,13	MCF-7	breast:
42	chr6:26213820..26217915-chr6:27859360..27862633,4	K562	blood:
43	chr6:26215459..26218036-chr7:5567736..5570209,2	K562	blood:
44	chr6:26211090..26218818-chr6:27857037..27863909,13	K562	blood:
45	chr19:13261564..13264008-chr6:26216101..26217933,2	K562	blood:
46	chr6:26024741..26028835-chr6:26213584..26218792,8	MCF-7	breast:
47	chr6:26214809..26219329-chr6:27098036..27102129,6	MCF-7	breast:
48	chr12:27486045..27487027-chr6:26217496..26218007,2	Hela-S3	cervix:
49	chr6:26216294..26218815-chr6:27772946..27775743,3	MCF-7	breast:
50	chr3:146262351..146263155-chr6:26216981..26217771,2	Hela-S3	cervix:

No data

Variant related genes	Relation type
HIST1H2BG	TF binding region
ENSG00000233224	Chromatin interaction
ENSG00000198366	Chromatin interaction
ENSG00000185130	Chromatin interaction
ENSG00000196176	Chromatin interaction
ENSG00000188313	Chromatin interaction
ENSG00000273004	Chromatin interaction
ENSG00000242294	Chromatin interaction
ENSG00000184678	Chromatin interaction
ENSG00000124529	Chromatin interaction
ENSG00000151422	Chromatin interaction
ENSG00000197903	Chromatin interaction
ENSG00000160888	Chromatin interaction
ENSG00000170345	Chromatin interaction
ENSG00000197238	Chromatin interaction
ENSG00000184825	Chromatin interaction
ENSG00000217646	Chromatin interaction
ENSG00000128016	Chromatin interaction
ENSG00000172757	Chromatin interaction
ENSG00000228223	Chromatin interaction
ENSG00000116199	Chromatin interaction
ENSG00000217862	Chromatin interaction
ENSG00000197153	Chromatin interaction
ENSG00000198339	Chromatin interaction
ENSG00000233822	Chromatin interaction
ENSG00000101040	Chromatin interaction
ENSG00000104904	Chromatin interaction
ENSG00000168003	Chromatin interaction
ENSG00000196532	Chromatin interaction
ENSG00000268471	Chromatin interaction
ENSG00000184348	Chromatin interaction
ENSG00000039123	Chromatin interaction
ENSG00000196331	Chromatin interaction
ENSG00000187013	Chromatin interaction
ENSG00000265565	Chromatin interaction
ENSG00000167476	Chromatin interaction
ENSG00000147586	Chromatin interaction
ENSG00000067248	Chromatin interaction
ENSG00000235481	Chromatin interaction
ENSG00000198374	Chromatin interaction
ENSG00000113369	Chromatin interaction
ENSG00000103253	Chromatin interaction
ENSG00000167513	Chromatin interaction
ENSG00000162004	Chromatin interaction
ENSG00000270103	Chromatin interaction
ENSG00000075624	Chromatin interaction
ENSG00000263900	Chromatin interaction
ENSG00000199289	Chromatin interaction
ENSG00000124635	Chromatin interaction
ENSG00000182952	Chromatin interaction
ENSG00000234816	Chromatin interaction
ENSG00000267280	Chromatin interaction
ENSG00000181649	Chromatin interaction
ENSG00000184260	Chromatin interaction
ENSG00000196226	Chromatin interaction
ENSG00000087302	Chromatin interaction
ENSG00000155090	Chromatin interaction
ENSG00000196787	Chromatin interaction

Extended variants
information (count: 83 )
Associated
traits (count: 13 )

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10452600	0.90[ASW][hapmap];0.93[CHD][hapmap];0.82[GIH][hapmap];0.93[MEX][hapmap];0.96[TSI][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10484436	0.90[ASW][hapmap];1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];0.80[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10946808	0.82[JPT][hapmap]
rs11753131	0.90[ASW][hapmap];1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11753625	0.88[EUR][1000 genomes]
rs11753655	1.00[CEU][hapmap];0.89[CHB][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11754744	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11755210	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11755943	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11757394	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11757754	1.00[CEU][hapmap];0.89[CHB][hapmap];0.82[YRI][hapmap];0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11758351	0.91[ASW][hapmap];0.90[CHB][hapmap];0.93[CHD][hapmap];0.82[GIH][hapmap];1.00[LWK][hapmap];0.93[MEX][hapmap];1.00[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11759682	0.80[JPT][hapmap]
rs11759720	0.90[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs11759904	0.90[ASW][hapmap];1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1341759	0.90[ASW][hapmap];0.93[CHD][hapmap];0.82[GIH][hapmap];0.93[MEX][hapmap];0.96[TSI][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs16891378	0.90[ASW][hapmap];0.93[CHD][hapmap];0.82[GIH][hapmap];0.92[MEX][hapmap];0.96[TSI][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16891397	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs16891401	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs16891405	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16891443	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16891446	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16891455	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16891456	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16891466	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16891467	0.90[ASW][hapmap];1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.80[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16891474	0.85[EUR][1000 genomes]
rs17598927	0.93[CHD][hapmap];0.96[TSI][hapmap];0.86[EUR][1000 genomes]
rs2022448	0.85[CEU][hapmap];0.93[CHD][hapmap];0.90[GIH][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2050948	1.00[CEU][hapmap];0.89[CHB][hapmap];0.81[YRI][hapmap];0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2050950	1.00[CEU][hapmap];0.89[CHB][hapmap];0.82[YRI][hapmap];0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2069018	0.81[ASW][hapmap];0.85[CEU][hapmap];0.93[CHD][hapmap];0.90[GIH][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2069019	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2069020	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2143345	0.90[ASW][hapmap];1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2143346	0.90[ASW][hapmap];0.93[CHD][hapmap];0.82[GIH][hapmap];0.93[MEX][hapmap];0.96[TSI][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2143347	0.93[CHD][hapmap];0.82[GIH][hapmap];0.96[TSI][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2183948	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2893842	0.82[JPT][hapmap]
rs2893843	0.90[JPT][hapmap]
rs3734533	0.90[CHB][hapmap];0.93[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];0.83[YRI][hapmap];0.83[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs3757135	0.90[ASW][hapmap];0.86[CHD][hapmap];0.82[GIH][hapmap];0.93[MEX][hapmap];0.96[TSI][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3823157	0.80[JPT][hapmap]
rs41266801	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs41266807	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4412193	0.90[JPT][hapmap]
rs4496782	0.81[CHB][hapmap]
rs55643278	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55815656	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs55848726	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56186759	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56220351	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56398712	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67575965	0.82[ASN][1000 genomes]
rs6901243	0.80[JPT][hapmap]
rs6906367	0.81[CHB][hapmap]
rs6930616	0.90[JPT][hapmap]
rs7755741	0.82[JPT][hapmap]
rs811041	0.82[JPT][hapmap]
rs9358913	0.82[JPT][hapmap]
rs9358918	0.90[JPT][hapmap]
rs9358926	0.90[JPT][hapmap]
rs9358927	0.90[JPT][hapmap]
rs9379842	0.82[JPT][hapmap]
rs9393691	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029920	chr6:25638507-26585842	Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1215 gene(s)	inside rSNPs	diseases
2	nsv538162	chr6:25638507-26585842	Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1215 gene(s)	inside rSNPs	diseases
3	nsv1030351	chr6:25813178-26352046	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1189 gene(s)	inside rSNPs	diseases
4	nsv1023453	chr6:25853830-26528250	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1201 gene(s)	inside rSNPs	diseases
5	nsv1025237	chr6:25874326-26280867	Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1166 gene(s)	inside rSNPs	diseases
6	nsv538163	chr6:25874326-26280867	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1166 gene(s)	inside rSNPs	diseases
7	nsv428137	chr6:25987413-26351920	Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1181 gene(s)	inside rSNPs	diseases
8	nsv916992	chr6:25991630-26280921	Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1159 gene(s)	inside rSNPs	diseases
9	nsv1028232	chr6:26005449-26319756	Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1171 gene(s)	inside rSNPs	diseases
10	nsv870314	chr6:26008435-26280807	Flanking Active TSS Enhancers Active TSS Genic enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1151 gene(s)	inside rSNPs	diseases
11	nsv1023457	chr6:26014014-26305407	Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1170 gene(s)	inside rSNPs	diseases
12	nsv1025493	chr6:26026870-26223838	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1001 gene(s)	inside rSNPs	diseases
13	nsv1023979	chr6:26026870-26287399	Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1113 gene(s)	inside rSNPs	diseases
14	nsv1015782	chr6:26026870-26323895	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1114 gene(s)	inside rSNPs	diseases
15	nsv1018665	chr6:26026870-26352046	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1116 gene(s)	inside rSNPs	diseases
16	nsv482348	chr6:26082709-26261136	Enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	799 gene(s)	inside rSNPs	diseases
17	nsv883490	chr6:26172219-26231608	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	316 gene(s)	inside rSNPs	diseases
18	nsv1021294	chr6:26190316-26246784	Active TSS Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	309 gene(s)	inside rSNPs	diseases

mRNA abundance (count:13)

SNP	Gene	Cis/trans	Tissue	Source
rs1997768	HIST1H3E	cis	cerebellum	SCAN
rs1997768	TNFRSF1A	trans	parietal	SCAN
rs1997768	HIST1H3F	cis	cerebellum	SCAN
rs1997768	HIST1H2BG	cis	multi-tissue	Pritchard
rs1997768	ZNF187	cis	parietal	SCAN
rs1997768	HIST1H2AE	cis	Thyroid	GTEx
rs1997768	HIST1H2BF	cis	parietal	SCAN
rs1997768	HIST1H2AE	cis	multi-tissue	Pritchard
rs1997768	HIST1H3E	cis	parietal	SCAN
rs1997768	HIST1H4F	cis	parietal	SCAN
rs1997768	HIST1H2AE	cis	lymphoblastoid	seeQTL
rs1997768	HIST1H1D	cis	cerebellum	SCAN
rs1997768	HIST1H4F	cis	cerebellum	SCAN

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:26214000-26219000	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr6:26214200-26218600	Active TSS	Fetal Kidney	kidney
3	chr6:26214600-26219200	Active TSS	iPS-15b Cell Line	embryonic stem cell
4	chr6:26214800-26218600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr6:26214800-26219200	Active TSS	H1 Cell Line	embryonic stem cell
6	chr6:26215000-26218000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
7	chr6:26215000-26218800	Active TSS	Fetal Brain Female	brain
8	chr6:26215000-26219000	Active TSS	HUES6 Cell Line	embryonic stem cell
9	chr6:26215000-26219200	Active TSS	iPS-18 Cell Line	embryonic stem cell
10	chr6:26215000-26219400	Active TSS	iPS-20b Cell Line	embryonic stem cell
11	chr6:26215200-26217800	Active TSS	Rectal Mucosa Donor 31	rectum
12	chr6:26215200-26218800	Active TSS	HUES48 Cell Line	embryonic stem cell
13	chr6:26215200-26218800	Active TSS	HUES64 Cell Line	embryonic stem cell
14	chr6:26215200-26218800	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr6:26215200-26219000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr6:26215200-26219400	Active TSS	H9 Cell Line	embryonic stem cell
17	chr6:26215400-26217800	Active TSS	Esophagus	oesophagus
18	chr6:26215400-26218000	Active TSS	Breast Myoepithelial Primary Cells	Breast
19	chr6:26215400-26218400	Active TSS	Fetal Intestine Small	intestine
20	chr6:26215400-26218600	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr6:26215400-26218800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr6:26215400-26218800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
23	chr6:26215600-26217800	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
24	chr6:26215600-26217800	Active TSS	NHDF-Ad	bronchial
25	chr6:26215600-26218200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr6:26215600-26218200	Bivalent/Poised TSS	Brain Substantia Nigra	brain
27	chr6:26215600-26218400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr6:26215600-26218400	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
29	chr6:26215600-26218400	Active TSS	Pancreatic Islets	Pancreatic Islet
30	chr6:26215600-26218400	Active TSS	Small Intestine	intestine
31	chr6:26215600-26218600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr6:26215600-26218600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr6:26215600-26218600	Active TSS	Colonic Mucosa	Colon
34	chr6:26215800-26217800	Active TSS	Placenta Amnion	Placenta Amnion
35	chr6:26215800-26218000	Active TSS	Aorta	Aorta
36	chr6:26215800-26218000	Active TSS	Sigmoid Colon	Sigmoid Colon
37	chr6:26215800-26218000	Active TSS	HSMM	muscle
38	chr6:26215800-26218200	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr6:26215800-26218200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr6:26215800-26218200	Active TSS	Thymus	Thymus
41	chr6:26215800-26218400	Bivalent/Poised TSS	Brain Anterior Caudate	brain
42	chr6:26215800-26218400	Active TSS	Fetal Brain Male	brain
43	chr6:26215800-26218600	Active TSS	Fetal Intestine Large	intestine
44	chr6:26216000-26218000	Active TSS	Fetal Lung	lung
45	chr6:26216000-26218200	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
46	chr6:26216000-26218200	Active TSS	Colon Smooth Muscle	Colon
47	chr6:26216000-26218200	Active TSS	Duodenum Mucosa	Duodenum
48	chr6:26216000-26218200	Active TSS	HSMMtube	muscle
49	chr6:26216000-26218400	Bivalent/Poised TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr6:26216000-26218400	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links