Variant report

Variant	rs13425396
Chromosome Location	chr2:37654584-37654585
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs17020676	0.97[EUR][1000 genomes]
rs17020693	0.97[EUR][1000 genomes]
rs17020696	0.97[EUR][1000 genomes]
rs4425058	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57223658	0.97[EUR][1000 genomes]
rs57954128	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60003859	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs60205341	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60374526	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61022900	0.95[EUR][1000 genomes]
rs61356018	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61460713	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6708554	0.95[EUR][1000 genomes]
rs6708931	0.95[EUR][1000 genomes]
rs6711805	0.97[EUR][1000 genomes]
rs6727245	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6739990	0.97[EUR][1000 genomes]
rs6741256	0.95[EUR][1000 genomes]
rs6751874	0.97[EUR][1000 genomes]
rs6752214	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6752559	0.95[EUR][1000 genomes]
rs6755472	0.97[EUR][1000 genomes]
rs6755835	0.97[EUR][1000 genomes]
rs6756253	0.97[EUR][1000 genomes]
rs72865105	0.92[EUR][1000 genomes]
rs72879949	0.95[EUR][1000 genomes]
rs72879952	0.97[EUR][1000 genomes]
rs72879959	0.97[EUR][1000 genomes]
rs72879966	0.97[EUR][1000 genomes]
rs72879969	0.97[EUR][1000 genomes]
rs72879979	0.97[EUR][1000 genomes]
rs72879983	0.97[EUR][1000 genomes]
rs72881514	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72881515	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72881519	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72881552	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72881557	0.92[EUR][1000 genomes]
rs72881560	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73924621	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73924622	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73924623	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7570240	1.00[ASN][1000 genomes]
rs7587134	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833814	chr2:37643132-37840247	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37653800-37654600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr2:37654000-37654800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr2:37654400-37654800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links