Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:17949151..17952704-chr3:17953108..17957303,4	K562	blood:

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1019848	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1025392	0.88[AMR][1000 genomes]
rs12493277	0.88[CHB][hapmap]
rs1346885	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1367521	0.81[AMR][1000 genomes]
rs1430884	0.88[AMR][1000 genomes]
rs1430887	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs1430891	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs1529599	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs1864591	0.88[AMR][1000 genomes]
rs2116097	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs2337385	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs2337386	0.97[YRI][hapmap];0.93[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs4908944	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs4908989	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs4908990	0.81[CEU][hapmap]
rs6577601	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs6577604	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6784611	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs6793262	0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs6804191	0.85[AMR][1000 genomes]
rs736262	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs7616329	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs9814647	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9814726	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs9880185	0.93[YRI][hapmap];0.88[AFR][1000 genomes];0.91[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999594	chr3:17690416-17982318	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17950600-17959600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:17952200-17956400	Enhancers	Fetal Thymus	thymus
3	chr3:17952800-17955400	Enhancers	Primary B cells from cord blood	blood
4	chr3:17953800-17955000	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr3:17953800-17955800	Enhancers	Thymus	Thymus
6	chr3:17954200-17955800	Weak transcription	Duodenum Mucosa	Duodenum
7	chr3:17954200-17956200	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr3:17954400-17955200	Bivalent Enhancer	Primary B cells from peripheral blood	blood
9	chr3:17954400-17955400	Enhancers	Primary hematopoietic stem cells	blood
10	chr3:17954400-17956200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr3:17954400-17957800	Enhancers	Dnd41	blood
12	chr3:17954600-17956200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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