Variant report

Variant	rs6784611
Chromosome Location	chr3:17916665-17916666
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr3:17916173-17916714	K562	blood:	n/a	chr3:17916286-17916295 chr3:17916343-17916355 chr3:17916285-17916296 chr3:17916284-17916295
2	CEBPB	chr3:17916129-17916727	HepG2	liver:	n/a	chr3:17916286-17916295 chr3:17916343-17916355 chr3:17916285-17916296 chr3:17916284-17916295
3	CEBPB	chr3:17916138-17916681	IMR90	lung:	n/a	chr3:17916286-17916295 chr3:17916343-17916355 chr3:17916285-17916296 chr3:17916284-17916295
4	CEBPB	chr3:17916130-17916682	Hela-S3	cervix:	n/a	chr3:17916286-17916295 chr3:17916343-17916355 chr3:17916285-17916296 chr3:17916284-17916295
5	CEBPB	chr3:17916131-17916716	A549	lung:	n/a	chr3:17916286-17916295 chr3:17916343-17916355 chr3:17916285-17916296 chr3:17916284-17916295

Variant related genes	Relation type
ENSG00000213383	TF binding region

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1025392	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1346885	0.80[EUR][1000 genomes]
rs1346886	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs1367521	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1430884	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1430887	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1430891	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1529599	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1864591	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2116097	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2337385	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2337386	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4128378	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4908944	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4908989	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6577601	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6793262	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6804191	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs736262	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7374020	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7616329	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9814726	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9880185	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999594	chr3:17690416-17982318	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv966994	chr3:17915628-17921392	Enhancers Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17904200-17936200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr3:17916000-17917200	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr3:17916600-17917200	Enhancers	Monocytes-CD14+_RO01746	blood

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