Variant report

Variant	rs1367521
Chromosome Location	chr3:17973092-17973093
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:17965277..17968130-chr3:17969924..17974134,4	K562	blood:
2	chr3:17965767..17967550-chr3:17972634..17974823,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1019848	0.83[GIH][hapmap];0.83[MEX][hapmap]
rs1025392	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1346886	0.81[AMR][1000 genomes]
rs1430884	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1430887	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1430891	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1529599	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1864591	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2116097	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2337385	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2337386	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4128378	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4908944	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4908989	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4909005	0.86[ASN][1000 genomes]
rs6577601	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6577608	0.86[ASN][1000 genomes]
rs6784611	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6793262	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.80[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];0.95[TSI][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6804191	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6807199	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs736262	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7374020	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7430739	0.89[ASN][1000 genomes]
rs7431124	1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs7432256	0.86[ASN][1000 genomes]
rs7616329	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7644630	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs9814647	0.98[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs9814726	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9878816	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs9880185	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999594	chr3:17690416-17982318	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1367521	C3orf20	cis	parietal	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17968600-17974400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr3:17969000-17974200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr3:17970200-17984400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr3:17970600-17975200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr3:17970800-17974200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr3:17971000-17975200	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr3:17971200-17978400	Weak transcription	Primary hematopoietic stem cells	blood
8	chr3:17972600-17973600	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr3:17972800-17973600	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr3:17973000-17975200	Weak transcription	Dnd41	blood

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