Variant report

Variant	rs7644630
Chromosome Location	chr3:18035857-18035858
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:18017415..18021031-chr3:18035820..18038949,3	K562	blood:
2	chr3:18033298..18036724-chr3:18038153..18042609,4	K562	blood:
3	chr3:18030487..18032967-chr3:18035633..18037527,2	K562	blood:

Variant related genes	Relation type
ENSG00000226238	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1367521	0.86[ASN][1000 genomes]
rs2337386	1.00[JPT][hapmap]
rs4128378	0.86[ASN][1000 genomes]
rs4908954	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4908955	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4909001	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4909005	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6577608	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6784436	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6793262	1.00[JPT][hapmap]
rs6807199	0.90[ASN][1000 genomes]
rs7374020	0.86[ASN][1000 genomes]
rs7428364	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7430739	0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7431124	0.81[CEU][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7432256	0.84[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7611417	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7627212	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7641293	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7646613	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7649870	0.84[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs9310539	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9833830	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9878816	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9880185	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1807571	chr3:18017246-18057347	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:18029600-18037400	Weak transcription	Thymus	Thymus
2	chr3:18032800-18036000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr3:18034200-18037000	Weak transcription	Dnd41	blood
4	chr3:18035800-18036200	Enhancers	Fetal Thymus	thymus

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