Variant report

Variant	rs6784436
Chromosome Location	chr3:18057313-18057314
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs4908954	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4908955	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4909001	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6577608	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7428364	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7430739	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7431124	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7432256	0.82[AMR][1000 genomes]
rs7611417	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7627212	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7641293	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7644630	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7646613	0.91[AMR][1000 genomes]
rs7649870	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9310539	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9833830	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1807571	chr3:18017246-18057347	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:18046200-18076600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr3:18054800-18058400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr3:18055000-18088000	Weak transcription	Primary hematopoietic stem cells	blood
4	chr3:18055600-18060600	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr3:18056200-18057600	Weak transcription	Dnd41	blood
6	chr3:18056800-18059800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links