Variant report

Variant	rs7646613
Chromosome Location	chr3:18082465-18082466
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:18075093..18077944-chr3:18081662..18084069,2	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs2337386	1.00[JPT][hapmap]
rs4688914	0.83[ASN][1000 genomes]
rs4908954	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4908955	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4909001	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4909005	0.90[EUR][1000 genomes]
rs6577608	0.85[AMR][1000 genomes]
rs6784436	0.91[AMR][1000 genomes]
rs6793262	1.00[JPT][hapmap]
rs7428364	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7430739	0.82[AMR][1000 genomes]
rs7431124	1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.93[TSI][hapmap];0.85[AMR][1000 genomes]
rs7432256	0.81[CEU][hapmap];0.92[CHD][hapmap];0.87[GIH][hapmap];0.84[MEX][hapmap];0.87[TSI][hapmap];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7611417	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7627212	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7641293	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7644630	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7649870	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9310539	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9833830	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9878816	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9880185	1.00[JPT][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7646613	C3orf20	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:18055000-18088000	Weak transcription	Primary hematopoietic stem cells	blood
2	chr3:18082200-18082800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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